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Phylogeny Recapitulates Learning: Self-Optimization of Genetic Code
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Analysis of Phylogenetics and Evolution with R
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Evolution by Gene Duplication
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Origins of Order in Evolution: Self-Organization and Selection
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Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific ?-satellite DNA
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Searching tRNA sequences for relatedness to aminoacyl-tRNA synthetase families
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Phylogenetic Analysis of the Aminoacyl-tRNA synthetases
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Improving the performance of the Hopfield-Tank neural network through normalization and annealing
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Two types of aminoacyl-trna synthetases could be originally encoded by complementary strands of the same nucleic ACID
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A quantitative measure of error minimization in the genetic code
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Codon reassignment (codon capture) in evolution
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Amino Acid Exchangeability and the Adaptive Code Hypothesis
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On Primordial Sense–Antisense Coding
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An Autotrophic Origin for the Coded Amino Acids is Concordant with the Coevolution Theory of the Genetic Code
inferredcites →https://doi.org/10.1007/s11538-013-9900-zopenalex-snapshot
Gene Coexpression as Hebbian Learning in Prokaryotic Genomes
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Evolutionary Connectionism: Algorithmic Principles Underlying the Evolution of Biological Organisation in Evo-Devo, Evo-Eco and Evolutionary Transitions
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The origins of order; self organization and selection in evolution
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Structure-derived hydrophobic potential
inferredcites →https://doi.org/10.1016/j.jtbi.2016.08.022openalex-snapshot
The neutral emergence of error minimized genetic codes superior to the standard genetic code
inferredcites →https://doi.org/10.1016/j.tig.2006.08.003openalex-snapshot
Switching trypanosome coats: what's in the wardrobe?
inferredcites →https://doi.org/10.1016/s0079-6107(99)00006-1openalex-snapshot
Evolution of the genetic code
inferredcites →https://doi.org/10.1017/cbo9780511623486openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1038/nature24031openalex-snapshot
Expanding and reprogramming the genetic code
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The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1038/sj.hdy.6801086openalex-snapshot
On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases
inferredcites →https://doi.org/10.1073/pnas.79.8.2554openalex-snapshot
Neural networks and physical systems with emergent collective computational abilities.
inferredcites →https://doi.org/10.1093/biomet/37.1-2.17openalex-snapshot
NOTES ON CONTINUOUS STOCHASTIC PHENOMENA
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkn772openalex-snapshot
tRNAdb 2009: compilation of tRNA sequences and tRNA genes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026331openalex-snapshot
Early Fixation of an Optimal Genetic Code
inferredcites →https://doi.org/10.1098/rspb.2016.2864openalex-snapshot
The sources of adaptive variation
inferredcites →https://doi.org/10.1098/rsta.2016.0341openalex-snapshot
Universal biology and the statistical mechanics of early life
inferredcites →https://doi.org/10.1111/evo.12337openalex-snapshot
THE EVOLUTION OF PHENOTYPIC CORRELATIONS AND “DEVELOPMENTAL MEMORY”
inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00246.xopenalex-snapshot
DO WE NEED AN EXTENDED EVOLUTIONARY SYNTHESIS?
inferredcites →https://doi.org/10.1126/science.185.4154.862openalex-snapshot
Amino Acid Difference Formula to Help Explain Protein Evolution
inferredcites →https://doi.org/10.1126/science.279.5357.1665openalex-snapshot
Evolution of a Transfer RNA Gene Through a Point Mutation in the Anticodon
inferredcites →https://doi.org/10.1126/science.3755256openalex-snapshot
Computing with Neural Circuits: A Model
inferredcites →https://doi.org/10.1128/microbiolspec.mdna3-0038-2014openalex-snapshot
vlsAntigenic Variation Systems of Lyme DiseaseBorrelia: Eluding Host Immunity through both Random, Segmental Gene Conversion and Framework Heterogeneity
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The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed
inferredcites →https://doi.org/10.1186/s12859-018-2074-9openalex-snapshot
BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines
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Did homeobox gene duplications contribute to the Cambrian explosion?
inferredcites →https://doi.org/10.1287/ijoc.5.4.328openalex-snapshot
State-of-the-Art Survey—The Traveling Salesman Problem: A Neural Network Perspective
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.18637/jss.v022.i04openalex-snapshot
The ade4 Package: Implementing the Duality Diagram for Ecologists
inferredcites →https://doi.org/10.2307/1418888openalex-snapshot
The Organization of Behavior; A Neuropsychological Theory
inferredcites →https://doi.org/10.2307/2992183openalex-snapshot
Adaptation: Statistics and a Null Model for Estimating Phylogenetic Effects
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Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code
inferredcites →https://doi.org/10.5860/choice.39-5788openalex-snapshot
The Alfred Russel Wallace reader: a selection of writings from the field
inferredcites →https://doi.org/10.5860/choice.41-5949openalex-snapshot
Information theory, inference, and learning algorithms
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Probably approximately correct: nature's algorithms for learning and prospering in a complex world
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