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Mapping diversification metrics in macroecological studies: Prospects and challenges

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The reality and importance of founder speciation in evolution

inferredcites →https://doi.org/10.1002/bies.20794openalex-snapshot

Tree thinking for all biology: the problem with reading phylogenies as ladders of progress

inferredcites →https://doi.org/10.1002/ece3.1347openalex-snapshot

Ecological opportunity and the adaptive diversification of lineages

inferredcites →https://doi.org/10.1007/s12052-012-0421-2openalex-snapshot

Historical Biogeography: Evolution in Time and Space

inferredcites →https://doi.org/10.1016/0006-3207(92)91201-3openalex-snapshot

Conservation evaluation and phylogenetic diversity

inferredcites →https://doi.org/10.1016/j.tree.2004.09.011openalex-snapshot

Historical biogeography, ecology and species richness

inferredcites →https://doi.org/10.1016/j.tree.2004.11.010openalex-snapshot

Do early branching lineages signify ancestral traits?

inferredcites →https://doi.org/10.1016/j.tree.2010.05.002openalex-snapshot

Diversity dynamics: molecular phylogenies need the fossil record

inferredcites →https://doi.org/10.1016/j.tree.2013.05.004openalex-snapshot

Diversity in time and space: wanted dead and alive

inferredcites →https://doi.org/10.1016/s0169-5347(00)01910-8openalex-snapshot

Areas, cradles and museums: the latitudinal gradient in species richness

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Origination and extinction components of taxonomic diversity: General problems

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Analysis of an evolutionary species–area relationship

inferredcites →https://doi.org/10.1038/nature05587openalex-snapshot

Preserving the evolutionary potential of floras in biodiversity hotspots

inferredcites →https://doi.org/10.1038/nature11631openalex-snapshot

The global diversity of birds in space and time

inferredcites →https://doi.org/10.1038/nature22897openalex-snapshot

Speciation gradients and the distribution of biodiversity

inferredcites →https://doi.org/10.1038/s41559-017-0165openalex-snapshot

Five palaeobiological laws needed to understand the evolution of the living biota

inferredcites →https://doi.org/10.1038/s41598-016-0001-8openalex-snapshot

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

inferredcites →https://doi.org/10.1038/srep01164openalex-snapshot

Dispersal and niche evolution jointly shape the geographic turnover of phylogenetic clades across continents

inferredcites →https://doi.org/10.1038/srep26340openalex-snapshot

Phylogenetic niche conservatism explains an inverse latitudinal diversity gradient in freshwater arthropods

inferredcites →https://doi.org/10.1073/pnas.0811087106openalex-snapshot

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

inferredcites →https://doi.org/10.1073/pnas.1606868114openalex-snapshot

Accelerated body size evolution during cold climatic periods in the Cenozoic

inferredcites →https://doi.org/10.1080/11956860.1999.11682546openalex-snapshot

The relative importance of evolutionary and environmental controls on broad-scale patterns of species richness in North America

inferredcites →https://doi.org/10.1086/285453openalex-snapshot

The Evolution of Dispersal in Spatially and Temporally Varying Environments

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Explaining Species Richness from Continents to Communities: The Time‐for‐Speciation Effect in Emydid Turtles

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Phylogenetic Overdispersion in Floridian Oak Communities

inferredcites →https://doi.org/10.1086/430012openalex-snapshot

Diversity, Endemism, and Age Distributions in Macroevolutionary Sources and Sinks

inferredcites →https://doi.org/10.1086/507882openalex-snapshot

Evolutionary and Ecological Causes of the Latitudinal Diversity Gradient in Hylid Frogs: Treefrog Trees Unearth the Roots of High Tropical Diversity

inferredcites →https://doi.org/10.1086/511334openalex-snapshot

Phylogenetic Measures of Biodiversity

inferredcites →https://doi.org/10.1086/519009openalex-snapshot

Climate, Niche Conservatism, and the Global Bird Diversity Gradient

inferredcites →https://doi.org/10.1086/519403openalex-snapshot

Origination, Extinction, and Dispersal: Integrative Models for Understanding Present‐Day Diversity Gradients

inferredcites →https://doi.org/10.1086/659883openalex-snapshot

The Causes Of Species Richness Patterns Across Space, Time, And Clades And The Role Of “Ecological Limits”

inferredcites →https://doi.org/10.1086/667574openalex-snapshot

A Conceptual and Statistical Framework for Adaptive Radiations with a Key Role for Diversity Dependence

inferredcites →https://doi.org/10.1086/680850openalex-snapshot

Species Richness at Continental Scales Is Dominated by Ecological Limits

inferredcites →https://doi.org/10.1086/680859openalex-snapshot

Species Diversity Is Dynamic and Unbounded at Local and Continental Scales

inferredcites →https://doi.org/10.1086/689739openalex-snapshot

Shaping the Latitudinal Diversity Gradient: New Perspectives from a Synthesis of Paleobiology and Biogeography

inferredcites →https://doi.org/10.1086/690194openalex-snapshot

What Explains Patterns of Diversification and Richness among Animal Phyla?

inferredcites →https://doi.org/10.1086/692065openalex-snapshot

Microhabitat and Climatic Niche Change Explain Patterns of Diversification among Frog Families

inferredcites →https://doi.org/10.1086/694123openalex-snapshot

A Physiological Signature of the Cost of Reproduction Associated with Parental Care

inferredcites →https://doi.org/10.1086/694319openalex-snapshot

Rapid Diversification and Time Explain Amphibian Richness at Different Scales in the Tropical Andes, Earth’s Most Biodiverse Hotspot

inferredcites →https://doi.org/10.1086/697223openalex-snapshot

Comparative Evolution of an Archetypal Adaptive Radiation: Innovation and Opportunity inAnolisLizards

inferredcites →https://doi.org/10.1093/aob/mcv005openalex-snapshot

Phylogenetic analysis in Myrcia section Aulomyrcia and inferences on plant diversity in the Atlantic rainforest

inferredcites →https://doi.org/10.1093/biolinnean/blx030openalex-snapshot

Geographical diversification and the effect of model and data inadequacies: the bat diversity gradient as a case study

inferredcites →https://doi.org/10.1093/biolinnean/blx160openalex-snapshot

Climatic and evolutionary factors shaping geographical gradients of species richness in Anolis lizards

inferredcites →https://doi.org/10.1093/sysbio/46.1.195openalex-snapshot

Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography

inferredcites →https://doi.org/10.1093/sysbio/syq060openalex-snapshot

Primary Controls on Species Richness in Higher Taxa

inferredcites →https://doi.org/10.1093/sysbio/syr046openalex-snapshot

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

inferredcites →https://doi.org/10.1093/sysbio/syr062openalex-snapshot

Mass Extinction, Gradual Cooling, or Rapid Radiation? Reconstructing the Spatiotemporal Evolution of the Ancient Angiosperm Genus Hedyosmum (Chloranthaceae) Using Empirical and Simulated Approaches

inferredcites →https://doi.org/10.1093/sysbio/syt040openalex-snapshot

Bayesian Analysis of Biogeography when the Number of Areas is Large

inferredcites →https://doi.org/10.1093/sysbio/syu006openalex-snapshot

Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Data

inferredcites →https://doi.org/10.1093/sysbio/syu042openalex-snapshot

Biogeographic Analysis Reveals Ancient Continental Vicariance and Recent Oceanic Dispersal in Amphibians

inferredcites →https://doi.org/10.1093/sysbio/syu056openalex-snapshot

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

inferredcites →https://doi.org/10.1093/sysbio/syu131openalex-snapshot

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

inferredcites →https://doi.org/10.1093/sysbio/syw088openalex-snapshot

Uncovering Higher-Taxon Diversification Dynamics from Clade Age and Species-Richness Data

inferredcites →https://doi.org/10.1093/sysbio/syx029openalex-snapshot

A Phylogenetic, Biogeographic, and Taxonomic study of all Extant Species of Anolis (Squamata; Iguanidae)

inferredcites →https://doi.org/10.1093/sysbio/syx095openalex-snapshot

Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

inferredcites →https://doi.org/10.1098/rsbl.2010.0095openalex-snapshot

Bayesian island biogeography in a continental setting: the Rand Flora case

inferredcites →https://doi.org/10.1098/rspb.2008.0630openalex-snapshot

Density-dependent diversification in North American wood warblers

inferredcites →https://doi.org/10.1098/rspb.2010.0179openalex-snapshot

Phylogeny, niche conservatism and the latitudinal diversity gradient in mammals

inferredcites →https://doi.org/10.1098/rspb.2011.1439openalex-snapshot

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

inferredcites →https://doi.org/10.1098/rspb.2014.2889openalex-snapshot

Minimal effects of latitude on present-day speciation rates in New World birds

inferredcites →https://doi.org/10.1098/rstb.1994.0068openalex-snapshot

The reconstructed evolutionary process

inferredcites →https://doi.org/10.1098/rstb.1998.0212openalex-snapshot

Rates of speciation in the fossil record

inferredcites →https://doi.org/10.1098/rstb.2011.0058openalex-snapshot

Phylogenetic diversity as a window into the evolutionary and biogeographic histories of present-day richness gradients for mammals

inferredcites →https://doi.org/10.1098/rstb.2015.0217openalex-snapshot

The uncertain role of diversity dependence in species diversification and the need to incorporate time-varying carrying capacities

inferredcites →https://doi.org/10.1098/rstb.2015.0225openalex-snapshot

Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data

inferredcites →https://doi.org/10.1111/2041-210x.12199openalex-snapshot

BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

inferredcites →https://doi.org/10.1111/bij.12703openalex-snapshot

Reproductive isolation and the causes of speciation rate variation in nature

inferredcites →https://doi.org/10.1111/ecog.00952openalex-snapshot

Evolutionary and ecological causes of species richness patterns in North American angiosperm trees

inferredcites →https://doi.org/10.1111/ecog.02070openalex-snapshot

Phylogenetic community structure metrics and null models: a review with new methods and software

inferredcites →https://doi.org/10.1111/ecog.02480openalex-snapshot

Mechanistic simulation models in macroecology and biogeography: state‐of‐art and prospects

inferredcites →https://doi.org/10.1111/ele.12062openalex-snapshot

Macroevolutionary perspectives to environmental change

inferredcites →https://doi.org/10.1111/ele.12251openalex-snapshot

Phylogenetic approaches for studying diversification

inferredcites →https://doi.org/10.1111/ele.12461openalex-snapshot

Equilibrium and non‐equilibrium dynamics simultaneously operate in the Galápagos islands

inferredcites →https://doi.org/10.1111/evo.12820openalex-snapshot

Challenges in the estimation of extinction from molecular phylogenies: A response to Beaulieu and O'Meara

inferredcites →https://doi.org/10.1111/evo.12899openalex-snapshot

Extinction as a driver of avian latitudinal diversity gradients

inferredcites →https://doi.org/10.1111/evo.13227openalex-snapshot

FiSSE: A simple nonparametric test for the effects of a binary character on lineage diversification rates

inferredcites →https://doi.org/10.1111/geb.12196openalex-snapshot

Temperate extinction in squamate reptiles and the roots of latitudinal diversity gradients

inferredcites →https://doi.org/10.1111/geb.12398openalex-snapshot

Body sizes and diversification rates of lizards, snakes, amphisbaenians and the tuatara

inferredcites →https://doi.org/10.1111/geb.12686openalex-snapshot

Phylogenetic scale in ecology and evolution

inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb00826.xopenalex-snapshot

ABSOLUTE DIVERSIFICATION RATES IN ANGIOSPERM CLADES

inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb00940.xopenalex-snapshot

A LIKELIHOOD FRAMEWORK FOR INFERRING THE EVOLUTION OF GEOGRAPHIC RANGE ON PHYLOGENETIC TREES

inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01194.xopenalex-snapshot

LIKELIHOOD METHODS FOR DETECTING TEMPORAL SHIFTS IN DIVERSIFICATION RATES

inferredcites →https://doi.org/10.1111/j.1365-2699.2008.01885.xopenalex-snapshot

Inferring dispersal: a Bayesian approach to phylogeny‐based island biogeography, with special reference to the Canary Islands

inferredcites →https://doi.org/10.1111/j.1365-2699.2010.02466.xopenalex-snapshot

Evolutionary assembly of island faunas reverses the classic island-mainland richness difference in Anolis lizards

inferredcites →https://doi.org/10.1111/j.1365-2699.2011.02655.xopenalex-snapshot

Different evolutionary histories underlie congruent species richness gradients of birds and mammals

inferredcites →https://doi.org/10.1111/j.1365-2699.2012.02757.xopenalex-snapshot

Global patterns of amphibian phylogenetic diversity

inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01260.xopenalex-snapshot

Evolutionary constraints on regional faunas: whom, but not how many

inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01333.xopenalex-snapshot

Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions

inferredcites →https://doi.org/10.1111/j.1469-185x.2012.00245.xopenalex-snapshot

Is regional species diversity bounded or unbounded?

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00926.xopenalex-snapshot

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00166.xopenalex-snapshot

Testing the time‐for‐speciation effect in the assembly of regional biotas

inferredcites →https://doi.org/10.1111/jbi.12208openalex-snapshot

Neotropical diversification seen through glassfrogs

inferredcites →https://doi.org/10.1111/jbi.12228openalex-snapshot

Why are there so many species in the tropics?

inferredcites →https://doi.org/10.1111/jbi.12346openalex-snapshot

Into and out of the tropics: the generation of the latitudinal gradient among New World passerine birds

inferredcites →https://doi.org/10.1111/jbi.12898openalex-snapshot

Bayesian estimation of the global biogeographical history of the Solanaceae

inferredcites →https://doi.org/10.1111/jbi.12939openalex-snapshot

The geographical diversification of Furnariides: the role of forest versus open habitats in driving species richness gradients

inferredcites →https://doi.org/10.1111/jbi.12953openalex-snapshot

Structural bias in aggregated species‐level variables driven by repeated species co‐occurrences: a pervasive problem in community and assemblage data

inferredcites →https://doi.org/10.1111/jeb.12139openalex-snapshot

Recovering speciation and extinction dynamics based on phylogenies

inferredcites →https://doi.org/10.1111/mec.13413openalex-snapshot

In and out of refugia: historical patterns of diversity and demography in the North American Caesar's mushroom species complex

inferredcites →https://doi.org/10.1111/mec.13506openalex-snapshot

Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi

inferredcites →https://doi.org/10.1111/mec.13773openalex-snapshot

Into the Andes: multiple independent colonizations drive montane diversity in the Neotropical clearwing butterflies Godyridina

inferredcites →https://doi.org/10.1111/nph.13943openalex-snapshot

Macroecology of biodiversity: disentangling local and regional effects

inferredcites →https://doi.org/10.1111/nph.14629openalex-snapshot

Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot

inferredcites →https://doi.org/10.1126/science.1117727openalex-snapshot

The Tree-Thinking Challenge

inferredcites →https://doi.org/10.1126/science.1130880openalex-snapshot

Out of the Tropics: Evolutionary Dynamics of the Latitudinal Diversity Gradient

inferredcites →https://doi.org/10.1146/annurev-ecolsys-110512-135800openalex-snapshot

Diversity-Dependence, Ecological Speciation, and the Role of Competition in Macroevolution

inferredcites →https://doi.org/10.1146/annurev-ecolsys-112414-054102openalex-snapshot

Ecological and Evolutionary Drivers of Geographic Variation in Species Diversity

inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.102803.095431openalex-snapshot

Niche Conservatism: Integrating Evolution, Ecology, and Conservation Biology

inferredcites →https://doi.org/10.1146/annurev.ecolsys.37.091305.110035openalex-snapshot

Birth-Death Models in Macroevolution

inferredcites →https://doi.org/10.1146/annurev.es.15.110184.001025openalex-snapshot

Genetic Revolutions, Founder Effects, and Speciation

inferredcites →https://doi.org/10.1186/2051-3933-2-1openalex-snapshot

Transient windows for connectivity in a changing world

inferredcites →https://doi.org/10.1186/s40462-014-0016-3openalex-snapshot

Space, time and complexity in plant dispersal ecology

inferredcites →https://doi.org/10.1371/journal.pbio.1000493openalex-snapshot

Inferring the Dynamics of Diversification: A Coalescent Approach

inferredcites →https://doi.org/10.1371/journal.pbio.1001775openalex-snapshot

Faster Speciation and Reduced Extinction in the Tropics Contribute to the Mammalian Latitudinal Diversity Gradient

inferredcites →https://doi.org/10.1371/journal.pone.0089543openalex-snapshot

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

inferredcites →https://doi.org/10.1890/0012-9658(2000)081[2606:nmaosc]2.0.co;2openalex-snapshot

NULL MODEL ANALYSIS OF SPECIES CO-OCCURRENCE PATTERNS

inferredcites →https://doi.org/10.1890/0012-9658(2006)87[109:psofpc]2.0.co;2openalex-snapshot

PHYLOGENETIC STRUCTURE OF FLORIDIAN PLANT COMMUNITIES DEPENDS ON TAXONOMIC AND SPATIAL SCALE

inferredcites →https://doi.org/10.2307/177478openalex-snapshot

Null Model Analysis of Species Co-Occurrence Patterns

inferredcites →https://doi.org/10.2307/3545479openalex-snapshot

Global Patterns of Tree Species Richness in Moist Forests: Energy-Diversity Theory Does Not Account for Variation in Species Richness

inferredcites →https://doi.org/10.3389/fevo.2015.00051openalex-snapshot

Blind trust in unblinded observation in Ecology, Evolution, and Behavior

inferredcites →https://doi.org/10.3389/fevo.2015.00132openalex-snapshot

Integrating a Population Genomics Focus into Biogeographic and Macroecological Research

inferredcites →https://doi.org/10.3389/fgene.2015.00001openalex-snapshot

Hereditary hemorrhagic telangiectasia: genetics and molecular diagnostics in a new era

inferredcites →https://doi.org/10.3389/fgene.2015.00130openalex-snapshot

An engine for global plant diversity: highest evolutionary turnover and emigration in the American tropics

inferredcites →https://doi.org/10.3389/fgene.2016.00035openalex-snapshot

Extinction in Phylogenetics and Biogeography: From Timetrees to Patterns of Biotic Assemblage

inferredcites →https://doi.org/10.3389/fgene.2016.00096openalex-snapshot

Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models

inferredcites →https://doi.org/10.3390/d9030030openalex-snapshot

Biodiversity Dynamics on Islands: Explicitly Accounting for Causality in Mechanistic Models

inferredcites →https://doi.org/10.3732/ajb.1600012openalex-snapshot

Past, future, and present of state‐dependent models of diversification

inferredcites →https://doi.org/10.5735/086.054.0121openalex-snapshot

Phylogenetic Comparative Method for Geographical Radiation

inferredcites →https://doi.org/10.5772/intechopen.69516openalex-snapshot

Are Historical Biogeographical Events Able to Promote Biological Diversification?

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/ecog.04102openalex-snapshot

Tracing the diversification history of a Neogene rodent invasion into South America

inferred← citeshttps://doi.org/10.1111/geb.13249openalex-snapshot

Effects of evolutionary time, speciation rates and local abiotic conditions on the origin and maintenance of amphibian montane diversity

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