On the public citation graph

TAG.ME: Taxonomic Assignment of Genetic Markers for Ecology

https://doi.org/10.1101/263293
0 signed · 37 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/ismej.2017.119openalex-snapshot
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
inferredcites →https://doi.org/10.1038/nature21417openalex-snapshot
Root microbiota drive direct integration of phosphate stress and immunity
inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nrg3129openalex-snapshot
Experimental and analytical tools for studying the human microbiome
inferredcites →https://doi.org/10.1038/nrg3182openalex-snapshot
The human microbiome: at the interface of health and disease
inferredcites →https://doi.org/10.1093/bioinformatics/16.5.412openalex-snapshot
Assessing the accuracy of prediction algorithms for classification: an overview
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/bty113openalex-snapshot
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkt1244openalex-snapshot
Ribosomal Database Project: data and tools for high throughput rRNA analysis
inferredcites →https://doi.org/10.1093/nar/gku1341openalex-snapshot
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
inferredcites →https://doi.org/10.1093/nar/gkw984openalex-snapshot
Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/msystems.00062-16openalex-snapshot
mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking
inferredcites →https://doi.org/10.1128/msystems.00191-16openalex-snapshot
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
inferredcites →https://doi.org/10.1186/s12915-014-0069-1openalex-snapshot
The Earth Microbiome project: successes and aspirations
inferredcites →https://doi.org/10.1186/s13098-017-0261-xopenalex-snapshot
Worse inflammatory profile in omnivores than in vegetarians associates with the gut microbiota composition
inferredcites →https://doi.org/10.1186/s40168-018-0470-zopenalex-snapshot
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0094249openalex-snapshot
Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11356-022-18749-3openalex-snapshot
Effects of activated sludge and UV disinfection processes on the bacterial community and antibiotic resistance profile in a municipal wastewater treatment plant
inferred← citeshttps://doi.org/10.1016/j.nut.2024.112371openalex-snapshot
Gut bacterial markers involved in association of dietary inflammatory index with visceral adiposity
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.156773openalex-snapshot
Exploring the microbiome, antibiotic resistance genes, mobile genetic element, and potential resistant pathogens in municipal wastewater treatment plants in Brazil
inferred← citeshttps://doi.org/10.1080/19490976.2023.2297815openalex-snapshot
Evaluation of gut microbiota predictive potential associated with phenotypic characteristics to identify multifactorial diseases
inferred← citeshttps://doi.org/10.1101/2022.02.22.481482openalex-snapshot
Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites
inferred← citeshttps://doi.org/10.1109/bibm52615.2021.9669145openalex-snapshot
A Deep Learning Model for 16S rRNA Classification with Taxonomic Tree Embedding
inferred← citeshttps://doi.org/10.1111/1462-2920.14748openalex-snapshot
Oral delivery of pancreatitis‐associated protein by Lactococcus lactis displays protective effects in dinitro‐benzenesulfonic‐acid‐induced colitis model and is able to modulate the composition of the microbiota
inferred← citeshttps://doi.org/10.11606/t.5.2023.tde-22082023-142604openalex-snapshot
Avaliação do potencial preditivo da microbiota intestinal associada a características fenotípicas para identificação de doenças multifatoriais
inferred← citeshttps://doi.org/10.1186/s12915-023-01605-2openalex-snapshot
Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites
inferred← citeshttps://doi.org/10.17648/sbai-2019-111452openalex-snapshot
Uso de aprendizado de máquina para criação de um Banco de Dados com informações taxonômicas de gene de rRNA 16s
inferred← citeshttps://doi.org/10.3389/fcimb.2022.838750openalex-snapshot
Associations of Blautia Genus With Early-Life Events and Later Phenotype in the NutriHS
inferred← citeshttps://doi.org/10.3390/microorganisms12010068openalex-snapshot
Methotrexate and Non-Surgical Periodontal Treatment Change the Oral–Gut Microbiota in Rheumatoid Arthritis: A Prospective Cohort Study
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.