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Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s40142-016-0102-5openalex-snapshot
Integrative Networks Illuminate Biological Factors Underlying Gene–Disease Associations
inferredcites →https://doi.org/10.1016/j.cell.2011.02.016openalex-snapshot
Interactome Networks and Human Disease
inferredcites →https://doi.org/10.1016/j.cell.2012.09.016openalex-snapshot
A Validated Regulatory Network for Th17 Cell Specification
inferredcites →https://doi.org/10.1016/j.cell.2014.05.034openalex-snapshot
Expansion of Biological Pathways Based on Evolutionary Inference
inferredcites →https://doi.org/10.1016/j.cell.2014.07.020openalex-snapshot
CellNet: Network Biology Applied to Stem Cell Engineering
inferredcites →https://doi.org/10.1016/j.cell.2017.05.038openalex-snapshot
An Expanded View of Complex Traits: From Polygenic to Omnigenic
inferredcites →https://doi.org/10.1016/j.cell.2017.06.010openalex-snapshot
Defining a Cancer Dependency Map
inferredcites →https://doi.org/10.1016/j.cell.2017.10.049openalex-snapshot
A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles
inferredcites →https://doi.org/10.1016/j.cels.2018.03.001openalex-snapshot
Systematic Evaluation of Molecular Networks for Discovery of Disease Genes
inferredcites →https://doi.org/10.1016/j.cobeha.2014.09.003openalex-snapshot
Biological pathways and networks implicated in psychiatric disorders
inferredcites →https://doi.org/10.1016/j.physrep.2016.09.002openalex-snapshot
Community detection in networks: A user guide
inferredcites →https://doi.org/10.1038/35011540openalex-snapshot
From molecular to modular cell biology
inferredcites →https://doi.org/10.1038/msb.2011.70openalex-snapshot
The self‐assessment trap: can we all be better than average?
inferredcites →https://doi.org/10.1038/nature06757openalex-snapshot
Variations in DNA elucidate molecular networks that cause disease
inferredcites →https://doi.org/10.1038/nature06830openalex-snapshot
Hierarchical structure and the prediction of missing links in networks
inferredcites →https://doi.org/10.1038/nature08454openalex-snapshot
Molecular networks as sensors and drivers of common human diseases
inferredcites →https://doi.org/10.1038/nature21039openalex-snapshot
Rare and low-frequency coding variants alter human adult height
inferredcites →https://doi.org/10.1038/ncomms6890openalex-snapshot
Biological interpretation of genome-wide association studies using predicted gene functions
inferredcites →https://doi.org/10.1038/ng.1089openalex-snapshot
Developing predictive molecular maps of human disease through community-based modeling
inferredcites →https://doi.org/10.1038/ng.2355openalex-snapshot
Leveraging models of cell regulation and GWAS data in integrative network-based association studies
inferredcites →https://doi.org/10.1038/ng.2756openalex-snapshot
Systematic identification of trans eQTLs as putative drivers of known disease associations
inferredcites →https://doi.org/10.1038/ng.3097openalex-snapshot
Defining the role of common variation in the genomic and biological architecture of adult human height
inferredcites →https://doi.org/10.1038/ng.3118openalex-snapshot
Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens
inferredcites →https://doi.org/10.1038/ng.3259openalex-snapshot
Understanding multicellular function and disease with human tissue-specific networks
inferredcites →https://doi.org/10.1038/ng.3721openalex-snapshot
Disease variants alter transcription factor levels and methylation of their binding sites
inferredcites →https://doi.org/10.1038/ng993openalex-snapshot
Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing
inferredcites →https://doi.org/10.1038/nmeth.2016openalex-snapshot
Wisdom of crowds for robust gene network inference
inferredcites →https://doi.org/10.1038/nmeth.3773openalex-snapshot
Inferring causal molecular networks: empirical assessment through a community-based effort
inferredcites →https://doi.org/10.1038/nmeth.3799openalex-snapshot
Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases
inferredcites →https://doi.org/10.1038/nmeth.4077openalex-snapshot
OmniPath: guidelines and gateway for literature-curated signaling pathway resources
inferredcites →https://doi.org/10.1038/nmeth.4083openalex-snapshot
A scored human protein–protein interaction network to catalyze genomic interpretation
inferredcites →https://doi.org/10.1038/nrg.2017.38openalex-snapshot
Network propagation: a universal amplifier of genetic associations
inferredcites →https://doi.org/10.1038/nrgastro.2016.208openalex-snapshot
Current and emerging therapeutic targets for IBD
inferredcites →https://doi.org/10.1038/nrneph.2015.177openalex-snapshot
The emerging role of coagulation proteases in kidney disease
inferredcites →https://doi.org/10.1038/s41592-018-0039-6openalex-snapshot
GeNets: a unified web platform for network-based genomic analyses
inferredcites →https://doi.org/10.1038/sdata.2014.35openalex-snapshot
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies
inferredcites →https://doi.org/10.1038/srep00336openalex-snapshot
Consensus clustering in complex networks
inferredcites →https://doi.org/10.1038/srep04191openalex-snapshot
Annotation Enrichment Analysis: An Alternative Method for Evaluating the Functional Properties of Gene Sets
inferredcites →https://doi.org/10.1073/pnas.1219097111openalex-snapshot
Ranking and combining multiple predictors without labeled data
inferredcites →https://doi.org/10.1073/pnas.122653799openalex-snapshot
Community structure in social and biological networks
inferredcites →https://doi.org/10.1088/1367-2630/10/5/053039openalex-snapshot
Analysis of the structure of complex networks at different resolution levels
inferredcites →https://doi.org/10.1088/1742-5468/2008/10/p10008openalex-snapshot
Fast unfolding of communities in large networks
inferredcites →https://doi.org/10.1093/bioinformatics/17.suppl_1.s215openalex-snapshot
Inferring subnetworks from perturbed expression profiles
inferredcites →https://doi.org/10.1093/bioinformatics/btq078openalex-snapshot
SPICi: a fast clustering algorithm for large biological networks
inferredcites →https://doi.org/10.1093/bioinformatics/btu263openalex-snapshot
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
inferredcites →https://doi.org/10.1093/nar/gkq1184openalex-snapshot
NCBI GEO: archive for functional genomics data sets--10 years on
inferredcites →https://doi.org/10.1093/nar/gku1003openalex-snapshot
STRING v10: protein–protein interaction networks, integrated over the tree of life
inferredcites →https://doi.org/10.1093/nar/gkw1040openalex-snapshot
Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse
inferredcites →https://doi.org/10.1101/056952openalex-snapshot
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
inferredcites →https://doi.org/10.1101/gr.082214.108openalex-snapshot
Exploring the human genome with functional maps
inferredcites →https://doi.org/10.1103/physreve.69.026113openalex-snapshot
Finding and evaluating community structure in networks
inferredcites →https://doi.org/10.1103/physrevx.5.011027openalex-snapshot
Identifying Modular Flows on Multilayer Networks Reveals Highly Overlapping Organization in Interconnected Systems
inferredcites →https://doi.org/10.1126/science.1073374openalex-snapshot
Hierarchical Organization of Modularity in Metabolic Networks
inferredcites →https://doi.org/10.1137/080738970openalex-snapshot
A Singular Value Thresholding Algorithm for Matrix Completion
inferredcites →https://doi.org/10.1145/1854776.1854812openalex-snapshot
Markov clustering of protein interaction networks with improved balance and scalability
inferredcites →https://doi.org/10.1161/circresaha.117.303776openalex-snapshot
Contemporary Approaches to Modulating the Nitric Oxide–cGMP Pathway in Cardiovascular Disease
inferredcites →https://doi.org/10.1186/1471-2105-14-23openalex-snapshot
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot
Gene ontology analysis for RNA-seq: accounting for selection bias
inferredcites →https://doi.org/10.1186/s12918-017-0405-5openalex-snapshot
Finding low-conductance sets with dense interactions (FLCD) for better protein complex prediction
inferredcites →https://doi.org/10.1371/journal.pcbi.1004714openalex-snapshot
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
inferredcites →https://doi.org/10.1371/journal.pgen.1003500openalex-snapshot
Sex-stratified Genome-wide Association Studies Including 270,000 Individuals Show Sexual Dimorphism in Genetic Loci for Anthropometric Traits
inferredcites →https://doi.org/10.1371/journal.pone.0076339openalex-snapshot
Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks
inferredcites →https://doi.org/10.48550/arxiv.1202.5398openalex-snapshot
Mod-CSA: Modularity optimization by conformational space annealing
inferredcites →https://doi.org/10.48550/arxiv.physics/0512106openalex-snapshot
Computing communities in large networks using random walks (long version)
inferredcites →https://doi.org/10.7717/peerj.1525openalex-snapshot
Identifying communities from multiplex biological networks
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41598-020-74705-6openalex-snapshot
Finding disease modules for cancer and COVID-19 in gene co-expression networks with the Core&Peel method
inferred← citeshttps://doi.org/10.1086/710519openalex-snapshot
Gloomy Prospects and Roller Coasters: Finding Coherence in Genome-Wide Association Studies
inferred← citeshttps://doi.org/10.1101/2020.10.26.351783openalex-snapshot
A validated generally applicable approach using the systematic assessment of disease modules by GWAS reveals a multi-omic module strongly associated with risk factors in multiple sclerosis
inferred← citeshttps://doi.org/10.1186/s12859-019-2800-yopenalex-snapshot
Integrating data and knowledge to identify functional modules of genes: a multilayer approach
inferred← citeshttps://doi.org/10.1186/s12920-019-0628-yopenalex-snapshot
A deep neural network approach to predicting clinical outcomes of neuroblastoma patients
inferred← citeshttps://doi.org/10.12688/f1000research.15486.1openalex-snapshot
Identifying communities from multiplex biological networks by randomized optimization of modularity
inferred← citeshttps://doi.org/10.12688/f1000research.15845.1openalex-snapshot
Recursive module extraction using Louvain and PageRank
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000583openalex-snapshot
Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform
inferred← citeshttps://doi.org/10.3389/fgene.2019.00164openalex-snapshot
Adapting Community Detection Algorithms for Disease Module Identification in Heterogeneous Biological Networks
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