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Family-Companion: analyse, visualise, browse, query and share your homology clusters

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot

Fast and sensitive protein alignment using DIAMOND

inferredcites →https://doi.org/10.1073/pnas.1307862110openalex-snapshot

Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa

inferredcites →https://doi.org/10.1093/bioinformatics/btm193openalex-snapshot

Automatic genome-wide reconstruction of phylogenetic gene trees

inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

inferredcites →https://doi.org/10.1093/bioinformatics/bts079openalex-snapshot

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

inferredcites →https://doi.org/10.1093/bioinformatics/btt454openalex-snapshot

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

inferredcites →https://doi.org/10.1093/bioinformatics/btw474openalex-snapshot

MSAViewer: interactive JavaScript visualization of multiple sequence alignments

inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

inferredcites →https://doi.org/10.1093/nar/gkj123openalex-snapshot

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

inferredcites →https://doi.org/10.1093/nar/gku1220openalex-snapshot

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

inferredcites →https://doi.org/10.1093/nar/gkv1248openalex-snapshot

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

inferredcites →https://doi.org/10.1093/nar/gkv487openalex-snapshot

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

inferredcites →https://doi.org/10.1093/nar/gkw1107openalex-snapshot

InterPro in 2017—beyond protein family and domain annotations

inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

inferredcites →https://doi.org/10.1186/1471-2105-15-293openalex-snapshot

jvenn: an interactive Venn diagram viewer

inferredcites →https://doi.org/10.1186/s12864-015-2190-0openalex-snapshot

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

inferredcites →https://doi.org/10.1186/s13321-014-0044-4openalex-snapshot

InCHlib – interactive cluster heatmap for web applications

inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

inferredcites →https://doi.org/10.3389/fpls.2015.01126openalex-snapshot

Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00438-020-01677-7openalex-snapshot

Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics

inferred← citeshttps://doi.org/10.1093/nar/gkz333openalex-snapshot

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

inferred← citeshttps://doi.org/10.1105/tpc.19.00806openalex-snapshot

Phylotranscriptomics of the Pentapetalae Reveals Frequent Regulatory Variation in Plant Local Responses to the Fungal Pathogen Sclerotinia sclerotiorum

inferred← citeshttps://doi.org/10.1111/mpp.12737openalex-snapshot

Role of the acquisition of a type 3 secretion system in the emergence of novel pathogenic strains of Xanthomonas

inferred← citeshttps://doi.org/10.1186/s12864-018-4686-xopenalex-snapshot

Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species

inferred← citeshttps://doi.org/10.3389/fmicb.2022.984832openalex-snapshot

Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats

inferred← citeshttps://doi.org/10.3390/ijms20133266openalex-snapshot

In Vitro Acquisition of Specific Small Interfering RNAs Inhibits the Expression of Some Target Genes in the Plant Ectoparasite Xiphinema index

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