On the public citation graph

Most regulatory interactions are not in linkage disequilibrium

https://doi.org/10.1101/272245
0 signed · 43 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1016/j.ajhg.2014.10.004openalex-snapshot
Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2016.09.037openalex-snapshot
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
inferredcites →https://doi.org/10.1016/j.cels.2016.07.002openalex-snapshot
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
inferredcites →https://doi.org/10.1016/j.tig.2016.10.008openalex-snapshot
Mining the Unknown: Assigning Function to Noncoding Single Nucleotide Polymorphisms
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature13835openalex-snapshot
Genetic and epigenetic fine mapping of causal autoimmune disease variants
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
inferredcites →https://doi.org/10.1038/nature19847openalex-snapshot
Chromosome conformation elucidates regulatory relationships in developing human brain
inferredcites →https://doi.org/10.1038/nature24277openalex-snapshot
Genetic effects on gene expression across human tissues
inferredcites →https://doi.org/10.1038/ng.2205openalex-snapshot
Genetics of gene expression in primary immune cells identifies cell type–specific master regulators and roles of HLA alleles
inferredcites →https://doi.org/10.1038/ng.3674openalex-snapshot
Modeling disease risk through analysis of physical interactions between genetic variants within chromatin regulatory circuitry
inferredcites →https://doi.org/10.1038/ng.3682openalex-snapshot
Chromatin structure–based prediction of recurrent noncoding mutations in cancer
inferredcites →https://doi.org/10.1038/ng.3963openalex-snapshot
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
inferredcites →https://doi.org/10.1038/nrg3663openalex-snapshot
CTCF: an architectural protein bridging genome topology and function
inferredcites →https://doi.org/10.1056/nejmoa1502214openalex-snapshot
FTO Obesity Variant Circuitry and Adipocyte Browning in Humans
inferredcites →https://doi.org/10.1073/pnas.1317023110openalex-snapshot
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
inferredcites →https://doi.org/10.1073/pnas.1506255112openalex-snapshot
Multiple functional variants in long-range enhancer elements contribute to the risk of SNP rs965513 in thyroid cancer
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/hmg/ddv194openalex-snapshot
Dissecting the genetics of the human transcriptome identifies novel trait-related trans -eQTLs and corroborates the regulatory relevance of non-protein coding loci
inferredcites →https://doi.org/10.1093/hmg/ddw151openalex-snapshot
SUGP1 is a novel regulator of cholesterol metabolism
inferredcites →https://doi.org/10.1093/nar/gkt1229openalex-snapshot
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
inferredcites →https://doi.org/10.1093/nar/gkw1022openalex-snapshot
3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes
inferredcites →https://doi.org/10.1093/nar/gkw1133openalex-snapshot
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)
inferredcites →https://doi.org/10.1101/238360openalex-snapshot
The genomic false shuffle: epigenetic maintenance of topological domains in the rearranged gibbon genome
inferredcites →https://doi.org/10.1109/mcse.2007.55openalex-snapshot
Matplotlib: A 2D Graphics Environment
inferredcites →https://doi.org/10.1126/science.1069424openalex-snapshot
The Structure of Haplotype Blocks in the Human Genome
inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot
PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
inferredcites →https://doi.org/10.1126/science.aaf7613openalex-snapshot
High-resolution interrogation of functional elements in the noncoding genome
inferredcites →https://doi.org/10.1161/circgenetics.115.001274openalex-snapshot
RP1-13D10.2 Is a Novel Modulator of Statin-Induced Changes in Cholesterol
inferredcites →https://doi.org/10.1186/s12915-018-0556-xopenalex-snapshot
Evolutionary stability of topologically associating domains is associated with conserved gene regulation
inferredcites →https://doi.org/10.1186/s13059-016-0992-2openalex-snapshot
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
inferredcites →https://doi.org/10.1186/s13059-016-1138-2openalex-snapshot
iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.5281/zenodo.16303openalex-snapshot
GNU Parallel 20150322 ('Hellwig')

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cell.2019.01.015openalex-snapshot
Defining the Genetic, Genomic, Cellular, and Diagnostic Architectures of Psychiatric Disorders
inferred← citeshttps://doi.org/10.1016/j.schres.2019.03.007openalex-snapshot
The three-dimensional landscape of the genome in human brain tissue unveils regulatory mechanisms leading to schizophrenia risk
inferred← citeshttps://doi.org/10.1038/s41467-019-10248-3openalex-snapshot
Human evolved regulatory elements modulate genes involved in cortical expansion and neurodevelopmental disease susceptibility
inferred← citeshttps://doi.org/10.1038/s41593-020-0603-0openalex-snapshot
A computational tool (H-MAGMA) for improved prediction of brain-disorder risk genes by incorporating brain chromatin interaction profiles
inferred← citeshttps://doi.org/10.1101/406330openalex-snapshot
Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits
inferred← citeshttps://doi.org/10.3390/ijms22147612openalex-snapshot
Chromatin Profiling Techniques: Exploring the Chromatin Environment and Its Contributions to Complex Traits
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.