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Comparative Transcriptomic and Metabolomic Analyses in Response to Cold in Tartary Buckwheat ( Fagopyrum tataricum )

https://doi.org/10.1101/278432
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00714468openalex-snapshot
Impact of low-temperature stress on general phenylpropanoid and anthocyanin pathways: Enhancement of transcript abundance and anthocyanin pigmentation in maize seedlings
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A putative functional MYB transcription factor induced by low temperature regulates anthocyanin biosynthesis in purple kale (Brassica Oleracea var. acephala f. tricolor)
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Analysis of thylakoid membrane protein and photosynthesis-related key enzymes in super high-yield hybrid rice LYPJ grown in field condition during senescence stage
inferredcites →https://doi.org/10.1007/s11738-015-1913-9openalex-snapshot
Anthocyanins accumulate in tartary buckwheat (Fagopyrum tataricum) sprout in response to cold stress
inferredcites →https://doi.org/10.1016/0031-9422(92)83695-uopenalex-snapshot
Alkyl ferulates in wound healing potato tubers
inferredcites →https://doi.org/10.1016/j.jcs.2012.09.012openalex-snapshot
Comparative metabolic profiling of pigmented rice (Oryza sativa L.) cultivars reveals primary metabolites are correlated with secondary metabolites
inferredcites →https://doi.org/10.1016/j.jgg.2012.01.007openalex-snapshot
The Upregulation of NtAN2 Expression at Low Temperature is Required for Anthocyanin Accumulation in Juvenile Leaves of Lc-transgenic Tobacco (Nicotiana tabacum L.)
inferredcites →https://doi.org/10.1016/j.jplph.2010.07.025openalex-snapshot
Both HY5 and HYH are necessary regulators for low temperature-induced anthocyanin accumulation in Arabidopsis seedlings
inferredcites →https://doi.org/10.1016/j.jplph.2016.08.010openalex-snapshot
Isolation and characterization of genes encoding leucoanthocyanidin reductase (FeLAR) and anthocyanidin reductase (FeANR) in buckwheat (Fagopyrum esculentum)
inferredcites →https://doi.org/10.1016/j.phytochem.2006.07.002openalex-snapshot
Structure–radical scavenging activity relationships of flavonoids
inferredcites →https://doi.org/10.1016/j.plantsci.2005.01.007openalex-snapshot
Effects of UV-B radiation, cold and desiccation stress on rutin concentration and rutin glucosidase activity in tartary buckwheat (Fagopyrum tataricum) leaves
inferredcites →https://doi.org/10.1016/j.plantsci.2005.10.009openalex-snapshot
Expression analysis of anthocyanin biosynthetic genes in apple skin: Effect of UV-B and temperature
inferredcites →https://doi.org/10.1016/j.scienta.2007.07.018openalex-snapshot
A time-course study of flavonoids in the sprouts of tartary (Fagopyrum tataricum Gaertn.) buckwheats
inferredcites →https://doi.org/10.1016/s0308-8146(02)00228-5openalex-snapshot
Composition and technological properties of the flour and bran from common and tartary buckwheat
inferredcites →https://doi.org/10.1016/s1369-5266(02)00256-xopenalex-snapshot
Biosynthesis of flavonoids and effects of stress
inferredcites →https://doi.org/10.1021/jf203891eopenalex-snapshot
Short Cold Storage Enhances the Anthocyanin Contents and Level of Transcripts Related to Their Biosynthesis in Blood Oranges
inferredcites →https://doi.org/10.1021/jf501335qopenalex-snapshot
Effects of Light-Emitting Diodes on Expression of Phenylpropanoid Biosynthetic Genes and Accumulation of Phenylpropanoids in Fagopyrum tataricum Sprouts
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.2251openalex-snapshot
Streaming fragment assignment for real-time analysis of sequencing experiments
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1046/j.1365-313x.2003.01834.xopenalex-snapshot
The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development
inferredcites →https://doi.org/10.1073/pnas.0406069101openalex-snapshot
A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.1107161108openalex-snapshot
Integration of low temperature and light signaling during cold acclimation response in Arabidopsis
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/jxb/erh143openalex-snapshot
Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3
inferredcites →https://doi.org/10.1093/mp/ssp106openalex-snapshot
Phenylpropanoid Biosynthesis
inferredcites →https://doi.org/10.1093/nar/gkl031openalex-snapshot
WEGO: a web tool for plotting GO annotations
inferredcites →https://doi.org/10.1101/gr.196469.115openalex-snapshot
TransRate: reference-free quality assessment of de novo transcriptome assemblies
inferredcites →https://doi.org/10.1104/pp.105.072579openalex-snapshot
Sucrose-Specific Induction of the Anthocyanin Biosynthetic Pathway in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.12.9.1619openalex-snapshot
anthocyanin1 of Petunia Encodes a Basic Helix-Loop-Helix Protein That Directly Activates Transcription of Structural Anthocyanin Genes
inferredcites →https://doi.org/10.1105/tpc.7.7.1085openalex-snapshot
Stress-Induced Phenylpropanoid Metabolism
inferredcites →https://doi.org/10.1111/j.1365-3040.2008.01920.xopenalex-snapshot
Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03373.xopenalex-snapshot
Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings
inferredcites →https://doi.org/10.1111/j.1399-3054.2007.00999.xopenalex-snapshot
Metabolomics of temperature stress
inferredcites →https://doi.org/10.1111/j.1399-3054.2012.01692.xopenalex-snapshot
Primary and secondary metabolism in the sun‐exposed peel and the shaded peel of apple fruit
inferredcites →https://doi.org/10.1111/ppl.12168openalex-snapshot
Dynamic changes in plant secondary metabolites during UV acclimation in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/tpj.12388openalex-snapshot
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids
inferredcites →https://doi.org/10.1126/science.1078540openalex-snapshot
Role of Anthocyanidin Reductase, Encoded by BANYULS in Plant Flavonoid Biosynthesis
inferredcites →https://doi.org/10.1146/annurev.arplant.50.1.473openalex-snapshot
THE SHIKIMATE PATHWAY
inferredcites →https://doi.org/10.1146/annurev.pp.40.060189.002023openalex-snapshot
Physiology and Molecular Biology of Phenylpropanoid Metabolism
inferredcites →https://doi.org/10.1155/2015/164261openalex-snapshot
In VitroAntibacterial, Antifungal, Antibiofilm, Antioxidant, and Anticancer Properties of Isosteviol Isolated from Endangered Medicinal PlantPittosporum tetraspermum
inferredcites →https://doi.org/10.1199/tab.0152openalex-snapshot
The Phenylpropanoid Pathway in Arabidopsis
inferredcites →https://doi.org/10.3136/fstr.12.199openalex-snapshot
Effect of Natural Light Periods on Rutin, Free Amino Acid and Vitamin C Contents in the Sprouts of Common (Fagopyrum esculentum Moench) and Tartary (F. tataricum Gaertn.) Buckwheats
inferredcites →https://doi.org/10.3389/fpls.2016.00063openalex-snapshot
Efficient Rutin and Quercetin Biosynthesis through Flavonoids-Related Gene Expression in Fagopyrum tataricum Gaertn. Hairy Root Cultures with UV-B Irradiation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3390/molecules24071310openalex-snapshot
Analysis of Flavonoid Metabolites in Buckwheat Leaves Using UPLC-ESI-MS/MS
inferred← citeshttps://doi.org/10.3390/plants11010090openalex-snapshot
Expression Analysis of Phenylpropanoid Pathway Genes and Metabolomic Analysis of Phenylpropanoid Compounds in Adventitious, Hairy, and Seedling Roots of Tartary Buckwheat
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