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Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology

https://doi.org/10.1101/281048
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.tree.2015.04.016openalex-snapshot
Post-molecular systematics and the future of phylogenetics
inferredcites →https://doi.org/10.1038/ismej.2013.254openalex-snapshot
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
inferredcites →https://doi.org/10.1038/nature16996openalex-snapshot
Real-time, portable genome sequencing for Ebola surveillance
inferredcites →https://doi.org/10.1038/s41467-018-03016-2openalex-snapshot
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
inferredcites →https://doi.org/10.1038/s41598-017-08461-5openalex-snapshot
Field-based species identification of closely-related plants using real-time nanopore sequencing
inferredcites →https://doi.org/10.1038/s41598-017-16920-2openalex-snapshot
Multilocus DNA barcoding – Species Identification with Multilocus Data
inferredcites →https://doi.org/10.1038/srep01748openalex-snapshot
Autotrophic Microbe Metagenomes and Metabolic Pathways Differentiate Adjacent Red Sea Brine Pools
inferredcites →https://doi.org/10.1038/srep41926openalex-snapshot
Limb proportions show developmental plasticity in response to embryo movement
inferredcites →https://doi.org/10.1073/pnas.0905845106openalex-snapshot
A DNA barcode for land plants
inferredcites →https://doi.org/10.1073/pnas.1209160109openalex-snapshot
The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1098/rstb.2015.0124openalex-snapshot
A trip down memory lane about sex differences in the brain
inferredcites →https://doi.org/10.1098/rstb.2015.0321openalex-snapshot
From writing to reading the encyclopedia of life
inferredcites →https://doi.org/10.1098/rstb.2015.0333openalex-snapshot
Counting animal species with DNA barcodes: Canadian insects
inferredcites →https://doi.org/10.1098/rstb.2015.0335openalex-snapshot
Multilocus inference of species trees and DNA barcoding
inferredcites →https://doi.org/10.1098/rstb.2015.0338openalex-snapshot
Telling plant species apart with DNA: from barcodes to genomes
inferredcites →https://doi.org/10.1101/gr.191692.115openalex-snapshot
A vision for ubiquitous sequencing
inferredcites →https://doi.org/10.1111/1755-0998.12046openalex-snapshot
The seven deadly sins of DNA barcoding
inferredcites →https://doi.org/10.1111/1755-0998.12363openalex-snapshot
DNA barcoding largely supports 250 years of classical taxonomy: identifications for C entral E uropean bees ( H ymenoptera, A poidea partim)
inferredcites →https://doi.org/10.1111/1755-0998.12416openalex-snapshot
Comprehensive DNA barcoding of the herpetofauna of Germany
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02177.xopenalex-snapshot
Microbial diversity and biogeochemistry of the Guaymas Basin deep‐sea hydrothermal plume
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02827.xopenalex-snapshot
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan‐Vavilov Deep
inferredcites →https://doi.org/10.1111/mec.13549openalex-snapshot
From barcodes to genomes: extending the concept of DNA barcoding
inferredcites →https://doi.org/10.1126/science.1093857openalex-snapshot
Environmental Genome Shotgun Sequencing of the Sargasso Sea
inferredcites →https://doi.org/10.1186/1471-2105-14-243openalex-snapshot
4273π: Bioinformatics education on low cost ARM hardware
inferredcites →https://doi.org/10.1371/journal.pone.0020552openalex-snapshot
DNA Barcode Sequence Identification Incorporating Taxonomic Hierarchy and within Taxon Variability
inferredcites →https://doi.org/10.1371/journal.pone.0030490openalex-snapshot
DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods
inferredcites →https://doi.org/10.7171/jbt.17-2801-009openalex-snapshot
Real-Time DNA Sequencing in the Antarctic Dry Valleys Using the Oxford Nanopore Sequencer

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/337212openalex-snapshot
Lightweight bioinformatics: evaluating the utility of Single Board Computer (SBC) clusters for portable, scalable Real-Time Bioinformatics in fieldwork environments via benchmarking
inferred← citeshttps://doi.org/10.1111/conl.12715openalex-snapshot
Emerging illegal wildlife trade issues: A global horizon scan
inferred← citeshttps://doi.org/10.31235/osf.io/b5azxopenalex-snapshot
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