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Widespread transcriptional scanning in the testis modulates gene evolution rates

https://doi.org/10.1101/282129
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2015.04.044openalex-snapshot
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2015.12.050openalex-snapshot
Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair
inferredcites →https://doi.org/10.1016/j.cell.2016.09.024openalex-snapshot
Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations
inferredcites →https://doi.org/10.1016/j.cell.2016.09.025openalex-snapshot
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
inferredcites →https://doi.org/10.1016/j.celrep.2013.05.031openalex-snapshot
Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis
inferredcites →https://doi.org/10.1016/j.celrep.2015.07.015openalex-snapshot
Macrophages Contribute to the Spermatogonial Niche in the Adult Testis
inferredcites →https://doi.org/10.1016/j.cels.2016.08.011openalex-snapshot
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure
inferredcites →https://doi.org/10.1016/j.devcel.2017.03.003openalex-snapshot
An Orchestrated Intron Retention Program in Meiosis Controls Timely Usage of Transcripts during Germ Cell Differentiation
inferredcites →https://doi.org/10.1016/j.fertnstert.2014.04.036openalex-snapshot
Fluorescence- and magnetic-activated cell sorting strategies to isolate and enrich human spermatogonial stem cells
inferredcites →https://doi.org/10.1016/j.molcel.2014.12.029openalex-snapshot
Human Promoters Are Intrinsically Directional
inferredcites →https://doi.org/10.1016/j.molcel.2016.11.007openalex-snapshot
Gene Architectures that Minimize Cost of Gene Expression
inferredcites →https://doi.org/10.1016/j.stem.2008.03.021openalex-snapshot
Global Transcription in Pluripotent Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.stem.2012.07.019openalex-snapshot
Direct Reprogramming of Fibroblasts into Embryonic Sertoli-like Cells by Defined Factors
inferredcites →https://doi.org/10.1016/j.stem.2014.04.006openalex-snapshot
Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis
inferredcites →https://doi.org/10.1016/j.ydbio.2010.09.019openalex-snapshot
Mice lacking FABP9/PERF15 develop sperm head abnormalities but are fertile
inferredcites →https://doi.org/10.1038/nature10532openalex-snapshot
The evolution of gene expression levels in mammalian organs
inferredcites →https://doi.org/10.1038/nature11396openalex-snapshot
Rate of de novo mutations and the importance of father’s age to disease risk
inferredcites →https://doi.org/10.1038/ng1103openalex-snapshot
Transcription-associated mutational asymmetry in mammalian evolution
inferredcites →https://doi.org/10.1038/nmeth.4402openalex-snapshot
Reversed graph embedding resolves complex single-cell trajectories
inferredcites →https://doi.org/10.1071/rd9890369openalex-snapshot
Stage-specific expression of nucleoprotein mRNAs during rat and mouse spermiogenesis
inferredcites →https://doi.org/10.1073/pnas.0709854105openalex-snapshot
Stage-specific gene expression is a fundamental characteristic of rat spermatogenic cells and Sertoli cells
inferredcites →https://doi.org/10.1073/pnas.0912402107openalex-snapshot
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
inferredcites →https://doi.org/10.1073/pnas.1608458113openalex-snapshot
Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice
inferredcites →https://doi.org/10.1093/molehr/gau018openalex-snapshot
The human testis-specific proteome defined by transcriptomics and antibody-based profiling
inferredcites →https://doi.org/10.1093/nar/gky579openalex-snapshot
The transcription-coupled DNA repair-initiating protein CSB promotes XRCC1 recruitment to oxidative DNA damage
inferredcites →https://doi.org/10.1095/biolreprod.104.039123openalex-snapshot
Nucleotide Excision Repair Activity Varies Among Murine Spermatogenic Cell Types1
inferredcites →https://doi.org/10.1101/217737openalex-snapshot
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
inferredcites →https://doi.org/10.1126/science.aaa0355openalex-snapshot
The human transcriptome across tissues and individuals
inferredcites →https://doi.org/10.1126/science.aaf1204openalex-snapshot
Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
inferredcites →https://doi.org/10.1186/s13059-016-0938-8openalex-snapshot
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
inferredcites →https://doi.org/10.1210/en.2016-1156openalex-snapshot
Sertoli Cells Modulate Testicular Vascular Network Development, Structure, and Function to Influence Circulating Testosterone Concentrations in Adult Male Mice
inferredcites →https://doi.org/10.15252/msb.20188503openalex-snapshot
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
inferredcites →https://doi.org/10.4103/1008-682x.173934openalex-snapshot
Sperm glyceraldehyde 3-phosphate dehydrogenase gene expression in asthenozoospermic spermatozoa

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-019-09182-1openalex-snapshot
Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis
inferred← citeshttps://doi.org/10.1093/biolre/ioy133openalex-snapshot
Unpackaging the genetics of mammalian fertility: strategies to identify the “reproductive genome”†
inferred← citeshttps://doi.org/10.1093/gbe/evy177openalex-snapshot
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species
inferred← citeshttps://doi.org/10.1101/605451openalex-snapshot
A reference map of the human protein interactome
inferred← citeshttps://doi.org/10.1101/793091openalex-snapshot
Long non-coding RNA gene regulation and trait associations across human tissues
inferred← citeshttps://doi.org/10.1242/dev.169854openalex-snapshot
A periodic table of cell types
inferred← citeshttps://doi.org/10.24072/pcjournal.99openalex-snapshot
The quiescent X, the replicative Y and the Autosomes
inferred← citeshttps://doi.org/10.7554/elife.47138openalex-snapshot
Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila
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