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Gene expression across tissues, sex, and life stages in the sea urchin Tripneustes gratilla [Toxopneustidae, Odontophora, Camarodonta]

https://doi.org/10.1101/284224
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Rates and relations of mitochondrial genome evolution across the Echinoidea, with special focus on the superfamily Odontophora
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Immune-related genes associated with intestinal tissue in the sea cucumber Holothuria glaberrima
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Impacts of a population outbreak of the urchin Tripneustes gratilla amongst Lord Howe Island coral communities
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Enzymatic properties of the stonefish (Synanceia verrucosa Bloch and Schneider, 1801) venom and purification of a lethal, hypotensive and cytolytic factor
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Purification and partial characterization of hyaluronidase from stonefish (Synanceja horrida) venom
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Opsin evolution in the Ambulacraria
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cDNA cloning and expression of Contractin A, a phospholipase A2-like protein from the globiferous pedicellariae of the venomous sea urchin Toxopneustes pileolus
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The immune gene repertoire encoded in the purple sea urchin genome
inferredcites →https://doi.org/10.1016/j.ydbio.2006.08.070openalex-snapshot
Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome
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Widespread transmission of independent cancer lineages within multiple bivalve species
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De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
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Cryptic speciation in pan-tropical sea urchins: a case study of an edge-of-range population of Tripneustes from the Kermadec Islands
inferredcites →https://doi.org/10.1073/pnas.1220673110openalex-snapshot
Evolutionary change during experimental ocean acidification
inferredcites →https://doi.org/10.1073/pnas.1507622112openalex-snapshot
Stonefish toxin defines an ancient branch of the perforin-like superfamily
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Retroviral-like element in a marine invertebrate.
inferredcites →https://doi.org/10.1074/jbc.271.41.25575openalex-snapshot
Stonustoxin Is a Novel Lethal Factor from Stonefish (Synanceja horrida) Venom
inferredcites →https://doi.org/10.1086/691437openalex-snapshot
A Waterborne Pursuit-Deterrent Signal Deployed by a Sea Urchin
inferredcites →https://doi.org/10.1086/bblv217n3p306openalex-snapshot
Methods for Karyotyping and for Localization of Developmentally Relevant Genes on the Chromosomes of the Purple Sea Urchin, Strongylocentrotus purpuratus
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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/gbe/evq063openalex-snapshot
Whole-Genome Positive Selection and Habitat-Driven Evolution in a Shallow and a Deep-Sea Urchin
inferredcites →https://doi.org/10.1093/nar/25.1.31openalex-snapshot
The SWISS-PROT protein sequence data bank and its supplement TrEMBL
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The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
inferredcites →https://doi.org/10.1093/nar/27.12.2503openalex-snapshot
Identification of a novel Sry-related gene and its germ cell-specific expression
inferredcites →https://doi.org/10.1093/nar/28.1.45openalex-snapshot
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
inferredcites →https://doi.org/10.1093/nar/gkn887openalex-snapshot
SpBase: the sea urchin genome database and web site
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026183openalex-snapshot
Evolution of sea urchin retroviral-like (SURL) elements: evidence from 40 echinoid species
inferredcites →https://doi.org/10.1098/rspb.2014.1729openalex-snapshot
Chordate evolution and the three-phylum system
inferredcites →https://doi.org/10.1101/gr.139170.112openalex-snapshot
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
inferredcites →https://doi.org/10.1111/1755-0998.12316openalex-snapshot
Characterization of the A ntarctic sea urchin ( S terechinus neumayeri) transcriptome and mitogenome: a molecular resource for phylogenetics, ecophysiology and global change biology
inferredcites →https://doi.org/10.1111/evo.12036openalex-snapshot
DIFFERENCES IN THE REGULATION OF GROWTH AND BIOMINERALIZATION GENES REVEALED THROUGH LONG-TERM COMMON-GARDEN ACCLIMATION AND EXPERIMENTAL GENOMICS IN THE PURPLE SEA URCHIN
inferredcites →https://doi.org/10.1111/j.1365-2109.2012.03219.xopenalex-snapshot
The development of a formulated feed containing Ulva (Chlorophyta) to promote rapid growth and enhanced production of high quality roe in the sea urchin Tripneustes gratilla (Linnaeus)
inferredcites →https://doi.org/10.1111/j.1463-6395.2010.00487.xopenalex-snapshot
The evolution of pedicellariae in echinoids: an arms race against pests and parasites
inferredcites →https://doi.org/10.1111/j.1558-5646.1954.tb00104.xopenalex-snapshot
GEOGRAPHIC SPECIATION IN TROPICAL ECHINOIDS
inferredcites →https://doi.org/10.1126/science.1133609openalex-snapshot
The Genome of the Sea Urchin Strongylocentrotus purpuratus
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2148-13-88openalex-snapshot
Phylogenomics of strongylocentrotid sea urchins
inferredcites →https://doi.org/10.1242/dev.048967openalex-snapshot
Evolutionary crossroads in developmental biology: sea urchins
inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot
Sex Determination: Why So Many Ways of Doing It?
inferredcites →https://doi.org/10.1371/journal.pbio.1002391openalex-snapshot
Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris
inferredcites →https://doi.org/10.2108/zsj.19.593openalex-snapshot
Bayesian Phylogenetic Analysis Supports Monophyly of Ambulacraria and of Cyclostomes
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.5962/bhl.title.156765openalex-snapshot
Systema naturae per regna tria naturae : secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis
inferredcites →https://doi.org/10.5962/bhl.title.54729openalex-snapshot
On the crustacea and echinodermata of the Pacific shores of North America.
inferredcites →https://doi.org/10.7717/peerj.1235openalex-snapshot
Survivorship and feeding preferences among size classes of outplanted sea urchins, Tripneustes gratilla , and possible use as biocontrol for invasive alien algae
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