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Retrograde Transport and ATG-4.2-Mediated Maturation Cooperate to Remove Autophagosomes from the Synapse

https://doi.org/10.1101/287144
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1 of the 94 references listed on this page is in the Retraction Watch database as retracted (export 2026-11-04): 10.1074/jbc.m208247200 (notice 2019-01-25).

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The JIP3 scaffold protein UNC‐16 regulates RAB‐5 dependent membrane trafficking at C. elegans synapses
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Hooks and comets: The story of microtubule polarity orientation in the neuron
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JIP1 and JIP3 cooperate to mediate TrkB anterograde axonal transport by activating kinesin-1
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The life cycle of the nematode Caenorhabditis elegans
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Maturation of autophagosomes and endosomes: A key role for Rab7
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Unraveling the roles of Atg4 proteases from autophagy modulation to targeted cancer therapy
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Atg8, a Ubiquitin-like Protein Required for Autophagosome Formation, Mediates Membrane Tethering and Hemifusion
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Methods in Mammalian Autophagy Research
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The Hairpin-type Tail-Anchored SNARE Syntaxin 17 Targets to Autophagosomes for Fusion with Endosomes/Lysosomes
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Autophagy and proteostasis in the control of synapse aging and disease
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The WD40 Repeat PtdIns(3)P-Binding Protein EPG-6 Regulates Progression of Omegasomes to Autophagosomes
inferredcites →https://doi.org/10.1016/j.devcel.2013.11.022openalex-snapshot
The C. elegans LC3 Acts Downstream of GABARAP to Degrade Autophagosomes by Interacting with the HOPS Subunit VPS39
inferredcites →https://doi.org/10.1016/j.devcel.2014.04.015openalex-snapshot
LC3 Binding to the Scaffolding Protein JIP1 Regulates Processive Dynein-Driven Transport of Autophagosomes
inferredcites →https://doi.org/10.1016/j.devcel.2014.06.001openalex-snapshot
Autophagosome Biogenesis in Primary Neurons Follows an Ordered and Spatially Regulated Pathway
inferredcites →https://doi.org/10.1016/j.devcel.2016.06.012openalex-snapshot
KIF1A/UNC-104 Transports ATG-9 to Regulate Neurodevelopment and Autophagy at Synapses
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Autophagy generates retrogradely transported organelles: a hypothesis
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The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
inferredcites →https://doi.org/10.1016/j.molcel.2016.08.021openalex-snapshot
The Vici Syndrome Protein EPG5 Is a Rab7 Effector that Determines the Fusion Specificity of Autophagosomes with Late Endosomes/Lysosomes
inferredcites →https://doi.org/10.1016/j.neuron.2016.09.037openalex-snapshot
A LRRK2-Dependent EndophilinA Phosphoswitch Is Critical for Macroautophagy at Presynaptic Terminals
inferredcites →https://doi.org/10.1016/j.neuron.2017.12.027openalex-snapshot
Integration of Plasticity Mechanisms within a Single Sensory Neuron of C. elegans Actuates a Memory
inferredcites →https://doi.org/10.1016/j.tcb.2014.05.002openalex-snapshot
Integrated regulation of motor-driven organelle transport by scaffolding proteins
inferredcites →https://doi.org/10.1016/j.tcb.2015.03.001openalex-snapshot
Eaten alive: novel insights into autophagy from multicellular model systems
inferredcites →https://doi.org/10.1016/s0092-8674(00)80691-1openalex-snapshot
Structural Basis of Presequence Recognition by the Mitochondrial Protein Import Receptor Tom20
inferredcites →https://doi.org/10.1016/s0092-8674(03)00113-2openalex-snapshot
The Immunoglobulin Superfamily Protein SYG-1 Determines the Location of Specific Synapses in C. elegans
inferredcites →https://doi.org/10.1016/s0896-6273(01)00532-3openalex-snapshot
UNC-16, a JNK-Signaling Scaffold Protein, Regulates Vesicle Transport in C. elegans
inferredcites →https://doi.org/10.1038/emboj.2010.74openalex-snapshot
LC3 and GATE‐16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis
inferredcites →https://doi.org/10.1038/ja.2017.104openalex-snapshot
Autophagy-regulating protease Atg4: structure, function, regulation and inhibition
inferredcites →https://doi.org/10.1038/nature11556openalex-snapshot
A call for transparent reporting to optimize the predictive value of preclinical research
inferredcites →https://doi.org/10.1038/nbt1037openalex-snapshot
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
inferredcites →https://doi.org/10.1038/nm.3232openalex-snapshot
The role of autophagy in neurodegenerative disease
inferredcites →https://doi.org/10.1038/nmeth.1249openalex-snapshot
Caenorhabditis elegans mutant allele identification by whole-genome sequencing
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nn.2575openalex-snapshot
Autophagy gone awry in neurodegenerative diseases
inferredcites →https://doi.org/10.1038/nn.2970openalex-snapshot
UNC-33 (CRMP) and ankyrin organize microtubules and localize kinesin to polarize axon-dendrite sorting
inferredcites →https://doi.org/10.1038/nn1796openalex-snapshot
A diacylglycerol kinase modulates long-term thermotactic behavioral plasticity in C. elegans
inferredcites →https://doi.org/10.1038/sj.emboj.7601498openalex-snapshot
Caenorhabditis elegans SAND‐1 is essential for RAB‐7 function in endosomal traffic
inferredcites →https://doi.org/10.1073/pnas.1204096109openalex-snapshot
Photo-inducible cell ablation in Caenorhabditis elegans using the genetically encoded singlet oxygen generating protein miniSOG
inferredcites →https://doi.org/10.1073/pnas.1400615111openalex-snapshot
Inducible and titratable silencing of Caenorhabditis elegans neurons in vivo with histamine-gated chloride channels
inferredcites →https://doi.org/10.1074/jbc.m110.199059openalex-snapshot
Kinetics Comparisons of Mammalian Atg4 Homologues Indicate Selective Preferences toward Diverse Atg8 Substrates
inferredcites →https://doi.org/10.1074/jbc.m112.365676openalex-snapshot
Differential Function of the Two Atg4 Homologues in the Aggrephagy Pathway in Caenorhabditis elegans
inferredcites →https://doi.org/10.1074/jbc.m208247200openalex-snapshot
Human Autophagins, a Family of Cysteine Proteinases Potentially Implicated in Cell Degradation by Autophagy
inferredcites →https://doi.org/10.1080/15548627.2014.1003478openalex-snapshot
Guidelines for monitoring autophagy in Caenorhabditis elegans.
inferredcites →https://doi.org/10.1080/15548627.2018.1437341openalex-snapshot
Delipidation of mammalian Atg8-family proteins by each of the four ATG4 proteases
inferredcites →https://doi.org/10.1083/jcb.121.2.305openalex-snapshot
Products of endocytosis and autophagy are retrieved from axons by regulated retrograde organelle transport.
inferredcites →https://doi.org/10.1083/jcb.147.2.435openalex-snapshot
Formation Process of Autophagosome Is Traced with Apg8/Aut7p in Yeast
inferredcites →https://doi.org/10.1083/jcb.151.2.263openalex-snapshot
The Reversible Modification Regulates the Membrane-Binding State of Apg8/Aut7 Essential for Autophagy and the Cytoplasm to Vacuole Targeting Pathway
inferredcites →https://doi.org/10.1083/jcb.200410136openalex-snapshot
Sunday Driver links axonal transport to damage signaling
inferredcites →https://doi.org/10.1083/jcb.201106120openalex-snapshot
Autophagosomes initiate distally and mature during transport toward the cell soma in primary neurons
inferredcites →https://doi.org/10.1083/jcb.201110127openalex-snapshot
Netrin instructs synaptic vesicle clustering through Rac GTPase, MIG-10, and the actin cytoskeleton
inferredcites →https://doi.org/10.1083/jcb.201211014openalex-snapshot
Mice deficient in Epg5 exhibit selective neuronal vulnerability to degeneration
inferredcites →https://doi.org/10.1083/jcb.201211160openalex-snapshot
Autophagosomal Syntaxin17-dependent lysosomal degradation maintains neuronal function in Drosophila
inferredcites →https://doi.org/10.1083/jcb.201412046openalex-snapshot
Axonal autophagosomes recruit dynein for retrograde transport through fusion with late endosomes
inferredcites →https://doi.org/10.1083/jcb.201606082openalex-snapshot
A STRIPAK complex mediates axonal transport of autophagosomes and dense core vesicles through PP2A regulation
inferredcites →https://doi.org/10.1083/jcb.201611113openalex-snapshot
Autophagy in the presynaptic compartment in health and disease
inferredcites →https://doi.org/10.1083/jcb.201612148openalex-snapshot
Impaired JIP3-dependent axonal lysosome transport promotes amyloid plaque pathology
inferredcites →https://doi.org/10.1091/mbc.01-10-0514openalex-snapshot
Targeting of Rough Endoplasmic Reticulum Membrane Proteins and Ribosomes in Invertebrate Neurons
inferredcites →https://doi.org/10.1091/mbc.e08-03-0312openalex-snapshot
An Atg4B Mutant Hampers the Lipidation of LC3 Paralogues and Causes Defects in Autophagosome Closure
inferredcites →https://doi.org/10.1091/mbc.e11-09-0785openalex-snapshot
Mammalian Atg2 proteins are essential for autophagosome formation and important for regulation of size and distribution of lipid droplets
inferredcites →https://doi.org/10.1091/mbc.e16-03-0205openalex-snapshot
The Ccz1-Mon1-Rab7 module and Rab5 control distinct steps of autophagy
inferredcites →https://doi.org/10.1093/jnen/64.2.113openalex-snapshot
Extensive Involvement of Autophagy in Alzheimer Disease: An Immuno-Electron Microscopy Study
inferredcites →https://doi.org/10.1098/rstb.1986.0056openalex-snapshot
The structure of the nervous system of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1111/j.1600-0854.2008.00722.xopenalex-snapshot
Co‐operative Versus Independent Transport of Different Cargoes by Kinesin‐1
inferredcites →https://doi.org/10.1126/science.1087782openalex-snapshot
Autophagy Genes Are Essential for Dauer Development and Life-Span Extension in C. elegans
inferredcites →https://doi.org/10.1126/science.1143762openalex-snapshot
Glia Promote Local Synaptogenesis Through UNC-6 (Netrin) Signaling in C. elegans
inferredcites →https://doi.org/10.1126/science.1220281openalex-snapshot
LAAT-1 Is the Lysosomal Lysine/Arginine Transporter That Maintains Amino Acid Homeostasis
inferredcites →https://doi.org/10.1186/1471-2164-6-118openalex-snapshot
Rapid single nucleotide polymorphism mapping in C. elegans
inferredcites →https://doi.org/10.1242/jcs.01114openalex-snapshot
Rab7 is required for the normal progression of the autophagic pathway in mammalian cells
inferredcites →https://doi.org/10.1242/jcs.01370openalex-snapshot
Role for Rab7 in maturation of late autophagic vacuoles
inferredcites →https://doi.org/10.1242/jcs.196352openalex-snapshot
New insights into autophagosome–lysosome fusion
inferredcites →https://doi.org/10.1371/journal.pgen.1003303openalex-snapshot
JNK-Interacting Protein 3 Mediates the Retrograde Transport of Activated c-Jun N-Terminal Kinase and Lysosomes
inferredcites →https://doi.org/10.1371/journal.pone.0054511openalex-snapshot
dnc-1/dynactin 1 Knockdown Disrupts Transport of Autophagosomes and Induces Motor Neuron Degeneration
inferredcites →https://doi.org/10.1385/1-59745-151-7:75openalex-snapshot
Single-Nucleotide Polymorphism Mapping
inferredcites →https://doi.org/10.14348/molcells.2015.0034openalex-snapshot
Autophagy in Neurodegenerative Diseases: From Mechanism to Therapeutic Approach
inferredcites →https://doi.org/10.1523/jneurosci.1137-06.2006openalex-snapshot
The AFD Sensory Neurons Encode Multiple Functions Underlying Thermotactic Behavior inCaenorhabditis elegans
inferredcites →https://doi.org/10.1523/jneurosci.2653-10.2011openalex-snapshot
TheCaenorhabditis elegansJIP3 Protein UNC-16 Functions As an Adaptor to Link Kinesin-1 with Cytoplasmic Dynein
inferredcites →https://doi.org/10.1523/jneurosci.3757-14.2015openalex-snapshot
Control of Autophagosome Axonal Retrograde Flux by Presynaptic Activity Unveiled Using Botulinum Neurotoxin Type A
inferredcites →https://doi.org/10.1523/jneurosci.4533-11.2012openalex-snapshot
Neuronal Stimulation Induces Autophagy in Hippocampal Neurons That Is Involved in AMPA Receptor Degradation after Chemical Long-Term Depression
inferredcites →https://doi.org/10.1523/jneurosci.5039-03.2004openalex-snapshot
Mutations in Caenorhabditis elegans Cytoplasmic Dynein Components Reveal Specificity of Neuronal Retrograde Cargo
inferredcites →https://doi.org/10.1523/jneurosci.6412-10.2011openalex-snapshot
Lysosomal Proteolysis Inhibition Selectively Disrupts Axonal Transport of Degradative Organelles and Causes an Alzheimer's-Like Axonal Dystrophy
inferredcites →https://doi.org/10.1534/genetics.112.144204openalex-snapshot
CloudMap: A Cloud-Based Pipeline for Analysis of Mutant Genome Sequences
inferredcites →https://doi.org/10.1534/genetics.112.147348openalex-snapshot
An Organelle Gatekeeper Function for Caenorhabditis elegans UNC-16 (JIP3) at the Axon Initial Segment
inferredcites →https://doi.org/10.1534/genetics.115.177345openalex-snapshot
UNC-16 (JIP3) Acts Through Synapse-Assembly Proteins to Inhibit the Active Transport of Cell Soma Organelles to Caenorhabditis elegans Motor Neuron Axons
inferredcites →https://doi.org/10.15698/mic2016.12.546openalex-snapshot
Autophagy: machinery and regulation
inferredcites →https://doi.org/10.3858/emm.2012.44.2.031openalex-snapshot
Neuronal autophagy and neurodegenerative diseases
inferredcites →https://doi.org/10.4161/auto.19385openalex-snapshot
A role for Atg8–PE deconjugation in autophagosome biogenesis
inferredcites →https://doi.org/10.4161/auto.19652openalex-snapshot
Dual roles of Atg8−PE deconjugation by Atg4 in autophagy
inferredcites →https://doi.org/10.4161/auto.24172openalex-snapshot
Autophagy facilitates organelle clearance during differentiation of human erythroblasts
inferredcites →https://doi.org/10.4161/auto.4451openalex-snapshot
Dissection of the Autophagosome Maturation Process by a Novel Reporter Protein, Tandem Fluorescent-Tagged LC3
inferredcites →https://doi.org/10.4161/auto.6.3.11262openalex-snapshot
Dynein- and activity-dependent retrograde transport of autophagosomes in neuronal axons
inferredcites →https://doi.org/10.4161/auto.6.5.12252openalex-snapshot
The autophagosomal protein LGG-2 acts synergistically with LGG-1 in dauer formation and longevity in C. elegans
inferredcites →https://doi.org/10.4161/auto.8.2.18373openalex-snapshot
Atg4 recycles inappropriately lipidated Atg8 to promote autophagosome biogenesis
inferredcites →https://doi.org/10.7554/elife.18459openalex-snapshot
Spatiotemporal regulation of autophagy during Caenorhabditis elegans aging
inferredcites →https://doi.org/10.7554/elife.21776openalex-snapshot
Impaired retrograde transport of axonal autophagosomes contributes to autophagic stress in Alzheimer’s disease neurons
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