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Structural insights into the conformational plasticity of the full-length trimeric HIV-1 envelope glycoprotein precursor

https://doi.org/10.1101/288472
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies
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Broadly Neutralizing Antibody 8ANC195 Recognizes Closed and Open States of HIV-1 Env
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Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G
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Modeling Virus- and Antibody-Specific Factors to Predict Human Immunodeficiency Virus Neutralization Efficiency
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Inference of Macromolecular Assemblies from Crystalline State
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Automated molecular microscopy: The new Leginon system
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RELION: Implementation of a Bayesian approach to cryo-EM structure determination
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Gctf: Real-time CTF determination and correction
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Topological Layers in the HIV-1 gp120 Inner Domain Regulate gp41 Interaction and CD4-Triggered Conformational Transitions
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Crystal Structure of the Human 20S Proteasome in Complex with Carfilzomib
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Selective recognition of oligomeric HIV-1 primary isolate envelope glycoproteins by potently neutralizing ligands requires efficient precursor cleavage
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The impact of envelope glycoprotein cleavage on the antigenicity, infectivity, and neutralization sensitivity of Env-pseudotyped human immunodeficiency virus type 1 particles
inferredcites →https://doi.org/10.1016/s0092-8674(00)80205-6openalex-snapshot
Core Structure of gp41 from the HIV Envelope Glycoprotein
inferredcites →https://doi.org/10.1016/s0092-8674(00)81771-7openalex-snapshot
Structure of the Hemagglutinin Precursor Cleavage Site, a Determinant of Influenza Pathogenicity and the Origin of the Labile Conformation
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Accurate determination of local defocus and specimen tilt in electron microscopy
inferredcites →https://doi.org/10.1038/31405openalex-snapshot
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
inferredcites →https://doi.org/10.1038/384184a0openalex-snapshot
CD4-dependent, antibody-sensitive interactions between HIV-1 and its co-receptor CCR-5
inferredcites →https://doi.org/10.1038/387426a0openalex-snapshot
Atomic structure of the ectodomain from HIV-1 gp41
inferredcites →https://doi.org/10.1038/nature01188openalex-snapshot
HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites
inferredcites →https://doi.org/10.1038/nature04817openalex-snapshot
Distribution and three-dimensional structure of AIDS virus envelope spikes
inferredcites →https://doi.org/10.1038/nature07159openalex-snapshot
Molecular architecture of native HIV-1 gp120 trimers
inferredcites →https://doi.org/10.1038/nature10696openalex-snapshot
Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
inferredcites →https://doi.org/10.1038/nature13808openalex-snapshot
Structure and immune recognition of trimeric pre-fusion HIV-1 Env
inferredcites →https://doi.org/10.1038/ncomms7144openalex-snapshot
Antibody potency relates to the ability to recognize the closed, pre-fusion form of HIV Env
inferredcites →https://doi.org/10.1038/nmeth.3769openalex-snapshot
Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale
inferredcites →https://doi.org/10.1038/nmeth.4193openalex-snapshot
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
inferredcites →https://doi.org/10.1038/nsb0498-276openalex-snapshot
Capture of an early fusion-active conformation of HIV-1 gp41
inferredcites →https://doi.org/10.1038/nsmb.2351openalex-snapshot
Subunit organization of the membrane-bound HIV-1 envelope glycoprotein trimer
inferredcites →https://doi.org/10.1038/nsmb.2600openalex-snapshot
Structural basis for diverse N-glycan recognition by HIV-1–neutralizing V1–V2–directed antibody PG16
inferredcites →https://doi.org/10.1038/nsmb.2711openalex-snapshot
Prefusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy
inferredcites →https://doi.org/10.1038/nsmb.3291openalex-snapshot
Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site
inferredcites →https://doi.org/10.1073/pnas.0307953101openalex-snapshot
Small-molecule inhibitors of HIV-1 entry block receptor-induced conformational changes in the viral envelope glycoproteins
inferredcites →https://doi.org/10.1073/pnas.1007227107openalex-snapshot
Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure
inferredcites →https://doi.org/10.1073/pnas.1307382110openalex-snapshot
Molecular architecture of the uncleaved HIV-1 envelope glycoprotein trimer
inferredcites →https://doi.org/10.1073/pnas.1615939113openalex-snapshot
Cryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop
inferredcites →https://doi.org/10.1073/pnas.2634931100openalex-snapshot
Electron tomography analysis of envelope glycoprotein trimers on HIV and simian immunodeficiency virus virions
inferredcites →https://doi.org/10.1084/jem.20042510openalex-snapshot
Antigenic conservation and immunogenicity of the HIV coreceptor binding site
inferredcites →https://doi.org/10.1089/aid.2010.0281openalex-snapshot
HIV Type 1 Env Precursor Cleavage State Affects Recognition by Both Neutralizing and Nonneutralizing gp41 Antibodies
inferredcites →https://doi.org/10.1107/s0907444904019158openalex-snapshot
Coot : model-building tools for molecular graphics
inferredcites →https://doi.org/10.1107/s0907444909052925openalex-snapshot
PHENIX : a comprehensive Python-based system for macromolecular structure solution
inferredcites →https://doi.org/10.1126/science.1118398openalex-snapshot
Structure of a V3-Containing HIV-1 gp120 Core
inferredcites →https://doi.org/10.1126/science.1245625openalex-snapshot
Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer
inferredcites →https://doi.org/10.1126/science.1245627openalex-snapshot
Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer
inferredcites →https://doi.org/10.1126/science.1254426openalex-snapshot
Conformational dynamics of single HIV-1 envelope trimers on the surface of native virions
inferredcites →https://doi.org/10.1126/science.280.5371.1884openalex-snapshot
The HIV-1 Envelope Glycoproteins: Fusogens, Antigens, and Immunogens
inferredcites →https://doi.org/10.1126/science.aad2450openalex-snapshot
Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer
inferredcites →https://doi.org/10.1126/science.aaf7066openalex-snapshot
Structural basis for membrane anchoring of HIV-1 envelope spike
inferredcites →https://doi.org/10.1128/jvi.00198-11openalex-snapshot
The Neutralization Breadth of HIV-1 Develops Incrementally over Four Years and Is Associated with CD4 + T Cell Decline and High Viral Load during Acute Infection
inferredcites →https://doi.org/10.1128/jvi.00756-11openalex-snapshot
Direct Antibody Access to the HIV-1 Membrane-Proximal External Region Positively Correlates with Neutralization Sensitivity
inferredcites →https://doi.org/10.1128/jvi.01543-12openalex-snapshot
HIV-1 Neutralizing Antibodies Display Dual Recognition of the Primary and Coreceptor Binding Sites and Preferential Binding to Fully Cleaved Envelope Glycoproteins
inferredcites →https://doi.org/10.1128/jvi.02036-08openalex-snapshot
Factors Associated with the Development of Cross-Reactive Neutralizing Antibodies during Human Immunodeficiency Virus Type 1 Infection
inferredcites →https://doi.org/10.1128/jvi.02428-16openalex-snapshot
Glycosylation Benchmark Profile for HIV-1 Envelope Glycoprotein Production Based on Eleven Env Trimers
inferredcites →https://doi.org/10.1128/jvi.02765-12openalex-snapshot
Proteolytic Processing of the Human Immunodeficiency Virus Envelope Glycoprotein Precursor Decreases Conformational Flexibility
inferredcites →https://doi.org/10.1128/jvi.65.4.2047-2055.1991openalex-snapshot
Folding, interaction with GRP78-BiP, assembly, and transport of the human immunodeficiency virus type 1 envelope protein
inferredcites →https://doi.org/10.1128/jvi.77.19.10557-10565.2003openalex-snapshot
Access of Antibody Molecules to the Conserved Coreceptor Binding Site on Glycoprotein gp120 Is Sterically Restricted on Primary Human Immunodeficiency Virus Type 1
inferredcites →https://doi.org/10.1128/mbio.01598-16openalex-snapshot
Release of gp120 Restraints Leads to an Entry-Competent Intermediate State of the HIV-1 Envelope Glycoproteins
inferredcites →https://doi.org/10.1146/annurev.immunol.17.1.657openalex-snapshot
CHEMOKINE RECEPTORS AS HIV-1 CORECEPTORS: Roles in Viral Entry, Tropism, and Disease
inferredcites →https://doi.org/10.1186/s12859-017-1757-yopenalex-snapshot
A deep convolutional neural network approach to single-particle recognition in cryo-electron microscopy
inferredcites →https://doi.org/10.1371/journal.pone.0182130openalex-snapshot
Massively parallel unsupervised single-particle cryo-EM data clustering via statistical manifold learning
inferredcites →https://doi.org/10.1371/journal.ppat.0020083openalex-snapshot
Cryo-Electron Tomographic Structure of an Immunodeficiency Virus Envelope Complex In Situ
inferredcites →https://doi.org/10.1371/journal.ppat.0020091openalex-snapshot
The SIV Surface Spike Imaged by Electron Tomography: One Leg or Three?
inferredcites →https://doi.org/10.1371/journal.ppat.1000203openalex-snapshot
Cryoelectron Tomography of HIV-1 Envelope Spikes: Further Evidence for Tripod-Like Legs
inferredcites →https://doi.org/10.1371/journal.ppat.1000880openalex-snapshot
Crystal Structure of HIV-1 gp41 Including Both Fusion Peptide and Membrane Proximal External Regions

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inferred← citeshttps://doi.org/10.1002/bit.27900openalex-snapshot
Full‐length G glycoprotein directly extracted from rabies virus with detergent and then stabilized by amphipols in liquid and freeze‐dried forms
inferred← citeshttps://doi.org/10.1128/jvi.00529-21openalex-snapshot
Asymmetric Structures and Conformational Plasticity of the Uncleaved Full-Length Human Immunodeficiency Virus Envelope Glycoprotein Trimer
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