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A comprehensive toolkit to enable MinION sequencing in any laboratory

https://doi.org/10.1101/289579
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4939-7249-4_5openalex-snapshot
Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing
inferredcites →https://doi.org/10.1007/s00253-013-5195-0openalex-snapshot
A new method for the determination of critical polyethylene glycol concentration for selective precipitation of DNA fragments
inferredcites →https://doi.org/10.1016/j.ab.2006.03.014openalex-snapshot
Purification of nucleic acids by selective precipitation with polyethylene glycol 6000
inferredcites →https://doi.org/10.1016/j.jmoldx.2018.02.006openalex-snapshot
Accurate Typing of Human Leukocyte Antigen Class I Genes by Oxford Nanopore Sequencing
inferredcites →https://doi.org/10.1021/jp0527103openalex-snapshot
DNA Ψ-Condensation and Reentrant Decondensation: Effect of the PEG Degree of Polymerization
inferredcites →https://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferredcites →https://doi.org/10.1038/nmeth.4184openalex-snapshot
Detecting DNA cytosine methylation using nanopore sequencing
inferredcites →https://doi.org/10.1038/s41467-018-03016-2openalex-snapshot
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
inferredcites →https://doi.org/10.1038/s41598-017-07650-6openalex-snapshot
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
inferredcites →https://doi.org/10.1088/1742-6596/307/1/012047openalex-snapshot
Comparison of the TLDA with the Nanodrop and the reference Qubit system
inferredcites →https://doi.org/10.1093/jxb/erx289openalex-snapshot
A world of opportunities with nanopore sequencing
inferredcites →https://doi.org/10.1093/nar/2.3.383openalex-snapshot
Size fractionation of double-stranded DNA by precipitation with polyethylene glycol
inferredcites →https://doi.org/10.1101/254276openalex-snapshot
A comprehensive model of DNA fragmentation for the preservation of High Molecular Weight DNA
inferredcites →https://doi.org/10.1105/tpc.17.00521openalex-snapshot
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
inferredcites →https://doi.org/10.1134/s0006297915110097openalex-snapshot
A rapid and cost-effective method for DNA extraction from archival herbarium specimens
inferredcites →https://doi.org/10.1186/1746-4811-10-21openalex-snapshot
Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
inferredcites →https://doi.org/10.1186/s13059-016-1103-0openalex-snapshot
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
inferredcites →https://doi.org/10.17504/protocols.io.hbvb2n6openalex-snapshot
Purification of HMW DNA from Fungi for long read sequencing v1
inferredcites →https://doi.org/10.17504/protocols.io.idmca46openalex-snapshot
DNA size selection (>1kb) and clean up using an optimized SPRI beads mixture v1
inferredcites →https://doi.org/10.2144/000114460openalex-snapshot
Extraction of High-Molecular-Weight Genomic DNA for Long-Read Sequencing of Single Molecules
inferredcites →https://doi.org/10.2144/97223st01openalex-snapshot
Effect of pH and Ionic Strength on the Spectrophotometric Assessment of Nucleic Acid Purity
inferredcites →https://doi.org/10.3791/2565openalex-snapshot
NanoDrop Microvolume Quantitation of Nucleic Acids
inferredcites →https://doi.org/10.7490/f1000research.1115331.1openalex-snapshot
DNA quality and nanopore sequencing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-319-97280-0_7openalex-snapshot
Genome Sequence of Castor Bean
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty1045openalex-snapshot
poreTally: run and publish de novo nanopore assembler benchmarks
inferred← citeshttps://doi.org/10.1101/434118openalex-snapshot
Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome
inferred← citeshttps://doi.org/10.1186/s12864-018-5348-8openalex-snapshot
Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
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