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Modelling phage-bacteria interactions driving predation and horizontal gene transfer

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/047122197x.ch21openalex-snapshot
Transduction in Gram‐Negative Bacteria
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Ecological and Evolutionary Benefits of Temperate Phage: What Does or Doesn't Kill You Makes You Stronger
inferredcites →https://doi.org/10.1016/0042-6822(74)90398-5openalex-snapshot
Superinfection exclusion by P22 prophage in lysogens of Salmonella typhimurium
inferredcites →https://doi.org/10.1016/b978-0-12-800259-9.00004-4openalex-snapshot
Bacteria–Phage Interactions in Natural Environments
inferredcites →https://doi.org/10.1016/j.cell.2010.03.034openalex-snapshot
Decision Making at a Subcellular Level Determines the Outcome of Bacteriophage Infection
inferredcites →https://doi.org/10.1016/j.chom.2017.06.018openalex-snapshot
Synergy between the Host Immune System and Bacteriophage Is Essential for Successful Phage Therapy against an Acute Respiratory Pathogen
inferredcites →https://doi.org/10.1016/j.chom.2017.10.010openalex-snapshot
The Gut Microbiota Facilitates Drifts in the Genetic Diversity and Infectivity of Bacterial Viruses
inferredcites →https://doi.org/10.1016/j.cub.2006.08.089openalex-snapshot
Ecology of Microbial Invasions: Amplification Allows Virus Carriers to Invade More Rapidly When Rare
inferredcites →https://doi.org/10.1016/j.ecolmodel.2006.04.023openalex-snapshot
A standard protocol for describing individual-based and agent-based models
inferredcites →https://doi.org/10.1016/j.meegid.2013.04.022openalex-snapshot
Phages of Staphylococcus aureus and their impact on host evolution
inferredcites →https://doi.org/10.1016/j.mib.2017.04.010openalex-snapshot
Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
inferredcites →https://doi.org/10.1016/j.tim.2015.12.011openalex-snapshot
Evolutionary Rationale for Phages as Complements of Antibiotics
inferredcites →https://doi.org/10.1016/j.tim.2016.06.011openalex-snapshot
The Ecology and Evolution of Microbial Competition
inferredcites →https://doi.org/10.1016/j.tim.2017.05.011openalex-snapshot
Transfer of Antibiotic Resistance in Staphylococcus aureus
inferredcites →https://doi.org/10.1016/j.tim.2017.12.004openalex-snapshot
The ‘Neglected’ Soil Virome – Potential Role and Impact
inferredcites →https://doi.org/10.1016/j.virol.2012.09.017openalex-snapshot
Tools from viruses: Bacteriophage successes and beyond
inferredcites →https://doi.org/10.1016/s1369-5274(99)00005-3openalex-snapshot
The biological cost of antibiotic resistance
inferredcites →https://doi.org/10.1038/21119openalex-snapshot
Marine viruses and their biogeochemical and ecological effects
inferredcites →https://doi.org/10.1038/ismej.2009.145openalex-snapshot
High-frequency phage-mediated gene transfer in freshwater environments determined at single-cell level
inferredcites →https://doi.org/10.1038/ismej.2013.245openalex-snapshot
High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments
inferredcites →https://doi.org/10.1038/ismej.2016.47openalex-snapshot
Genetic and life-history traits associated with the distribution of prophages in bacteria
inferredcites →https://doi.org/10.1038/ismej.2016.79openalex-snapshot
Prophages mediate defense against phage infection through diverse mechanisms
inferredcites →https://doi.org/10.1038/ismej.2017.190openalex-snapshot
Phage mobility is a core determinant of phage–bacteria coexistence in biofilms
inferredcites →https://doi.org/10.1038/ncomms11388openalex-snapshot
Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signalling
inferredcites →https://doi.org/10.1038/nrmicro.2015.13openalex-snapshot
Within-host evolution of bacterial pathogens
inferredcites →https://doi.org/10.1038/nrmicro.2016.62openalex-snapshot
Advancing microbial sciences by individual-based modelling
inferredcites →https://doi.org/10.1038/nrmicro1750openalex-snapshot
Marine viruses — major players in the global ecosystem
inferredcites →https://doi.org/10.1038/nrmicro3096openalex-snapshot
Revenge of the phages: defeating bacterial defences
inferredcites →https://doi.org/10.1038/nrmicro822openalex-snapshot
Population and evolutionary dynamics of phage therapy
inferredcites →https://doi.org/10.1039/c4mb00438hopenalex-snapshot
Evolution of the CRISPR-Cas adaptive immunity systems in prokaryotes: models and observations on virus–host coevolution
inferredcites →https://doi.org/10.1042/etls20170002openalex-snapshot
Phage therapy: awakening a sleeping giant
inferredcites →https://doi.org/10.1073/pnas.0504062102openalex-snapshot
Coevolutionary arms races between bacteria and bacteriophage
inferredcites →https://doi.org/10.1098/rspb.2014.2297openalex-snapshot
Population mixing promotes arms race host–parasite coevolution
inferredcites →https://doi.org/10.1111/1574-6976.12072openalex-snapshot
Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
inferredcites →https://doi.org/10.1111/ele.12064openalex-snapshot
Evolution of suicide as a defence strategy against pathogens in a spatially structured environment
inferredcites →https://doi.org/10.1111/imr.12565openalex-snapshot
A bacteriophages journey through the human body
inferredcites →https://doi.org/10.1111/j.1420-9101.2005.01026.xopenalex-snapshot
Spatial heterogeneity and the stability of host-parasite coexistence
inferredcites →https://doi.org/10.1111/jeb.13220openalex-snapshot
Effects of prior exposure to antibiotics on bacterial adaptation to phages
inferredcites →https://doi.org/10.1126/science.1142284openalex-snapshot
Adaptive Mutations in Bacteria: High Rate and Small Effects
inferredcites →https://doi.org/10.1128/aac.01028-06openalex-snapshot
Phage Therapy of Pseudomonas aeruginosa Infection in a Mouse Burn Wound Model
inferredcites →https://doi.org/10.1128/aac.44.7.1818-1824.2000openalex-snapshot
Role of Antibiotic Penetration Limitation in Klebsiella pneumoniae Biofilm Resistance to Ampicillin and Ciprofloxacin
inferredcites →https://doi.org/10.1128/aem.00446-14openalex-snapshot
Modeling the Infection Dynamics of Bacteriophages in Enteric Escherichia coli: Estimating the Contribution of Transduction to Antimicrobial Gene Spread
inferredcites →https://doi.org/10.1128/aem.02890-06openalex-snapshot
High-Frequency Phage-Mediated Gene Transfer among Escherichia coli Cells, Determined at the Single-Cell Level
inferredcites →https://doi.org/10.1128/jb.185.21.6467-6471.2003openalex-snapshot
Prophage Contribution to Bacterial Population Dynamics
inferredcites →https://doi.org/10.1128/jb.186.12.3677-3686.2004openalex-snapshot
Phage-Host Interaction: an Ecological Perspective
inferredcites →https://doi.org/10.1128/mmbr.68.3.560-602.2004openalex-snapshot
Phages and the Evolution of Bacterial Pathogens: from Genomic Rearrangements to Lysogenic Conversion
inferredcites →https://doi.org/10.1146/annurev-virology-101416-041624openalex-snapshot
The Distribution, Evolution, and Roles of Gene Transfer Agents in Prokaryotic Genetic Exchange
inferredcites →https://doi.org/10.1371/journal.pbio.2000225openalex-snapshot
Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History
inferredcites →https://doi.org/10.1371/journal.pcbi.1000716openalex-snapshot
Emergence of Spatial Structure in Cell Groups and the Evolution of Cooperation
inferredcites →https://doi.org/10.1371/journal.pcbi.1005486openalex-snapshot
Dynamics of adaptive immunity against phage in bacterial populations
inferredcites →https://doi.org/10.1371/journal.pgen.1005861openalex-snapshot
Carriage of λ Latent Virus Is Costly for Its Bacterial Host due to Frequent Reactivation in Monoxenic Mouse Intestine
inferredcites →https://doi.org/10.1371/journal.pone.0059043openalex-snapshot
Temperate Bacterial Viruses as Double-Edged Swords in Bacterial Warfare
inferredcites →https://doi.org/10.1371/journal.ppat.1004219openalex-snapshot
Bacteriophages as Vehicles for Antibiotic Resistance Genes in the Environment
inferredcites →https://doi.org/10.1529/biophysj.107.120212openalex-snapshot
Stochastic Receptor Expression Allows Sensitive Bacteria to Evade Phage Attack. Part I: Experiments
inferredcites →https://doi.org/10.3389/fmicb.2014.00153openalex-snapshot
Genetic basis for nitrate resistance in Desulfovibrio strains
inferredcites →https://doi.org/10.4161/bact.1.1.14942openalex-snapshot
Phages in nature

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.micres.2025.128230openalex-snapshot
Bridging phage production models and practical applications to control antibiotic-resistant bacteria
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