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DIMEdb: an integrated database and web service for metabolite identification in direct infusion mass spectrometery

https://doi.org/10.1101/291799
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/mas.20108openalex-snapshot
Mass spectrometry‐based metabolomics
inferredcites →https://doi.org/10.1002/rcm.2854openalex-snapshot
High‐throughput direct‐infusion ion trap mass spectrometry: a new method for metabolomics
inferredcites →https://doi.org/10.1002/rcm.5247openalex-snapshot
Semi‐targeted analysis of metabolites using capillary‐flow ion chromatography coupled to high‐resolution mass spectrometry
inferredcites →https://doi.org/10.1007/4735_2007_0229openalex-snapshot
The Golm Metabolome Database: a database for GC-MS based metabolite profiling
inferredcites →https://doi.org/10.1007/978-3-540-74719-2openalex-snapshot
Metabolomics : A Powerful Tool in Systems Biology
inferredcites →https://doi.org/10.1007/s00204-010-0609-6openalex-snapshot
The role of metabolites and metabolomics in clinically applicable biomarkers of disease
inferredcites →https://doi.org/10.1007/s00204-010-0635-4openalex-snapshot
Metabolomics: biomarkers of disease and drug toxicity
inferredcites →https://doi.org/10.1007/s00204-011-0679-0openalex-snapshot
The Human Bitumen Study: executive summary
inferredcites →https://doi.org/10.1007/s00216-013-6869-2openalex-snapshot
Metabolomics for unknown plant metabolites
inferredcites →https://doi.org/10.1007/s10337-012-2192-xopenalex-snapshot
Comments on the Baseline Removal Method Based on Quantile Regression and Comparison of Several Methods
inferredcites →https://doi.org/10.1007/s11306-005-1102-8openalex-snapshot
Metabolomics: building on a century of biochemistry to guide human health
inferredcites →https://doi.org/10.1007/s11306-006-0043-1openalex-snapshot
Evaluation of metabolite extraction strategies from tissue samples using NMR metabolomics
inferredcites →https://doi.org/10.1007/s11306-007-0082-2openalex-snapshot
Proposed minimum reporting standards for chemical analysis
inferredcites →https://doi.org/10.1007/s11306-012-0434-4openalex-snapshot
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics
inferredcites →https://doi.org/10.1016/j.aca.2008.04.043openalex-snapshot
Interferences and contaminants encountered in modern mass spectrometry
inferredcites →https://doi.org/10.1016/j.bbagen.2016.07.007openalex-snapshot
Metabolomic-based biomarker discovery for non-invasive lung cancer screening: A case study
inferredcites →https://doi.org/10.1016/j.jchromb.2008.04.049openalex-snapshot
Standardizing GC–MS metabolomics
inferredcites →https://doi.org/10.1016/j.trac.2007.08.003openalex-snapshot
Metabolomics technologies and metabolite identification
inferredcites →https://doi.org/10.1016/s0031-9422(02)00713-6openalex-snapshot
An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry
inferredcites →https://doi.org/10.1021/ac051437yopenalex-snapshot
XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification
inferredcites →https://doi.org/10.1021/ac060209gopenalex-snapshot
Targeted Profiling: Quantitative Analysis of 1 H NMR Metabolomics Data
inferredcites →https://doi.org/10.1021/ac300829fopenalex-snapshot
Annotation of the Human Adult Urinary Metabolome and Metabolite Identification Using Ultra High Performance Liquid Chromatography Coupled to a Linear Quadrupole Ion Trap-Orbitrap Mass Spectrometer
inferredcites →https://doi.org/10.1021/acs.analchem.6b01214openalex-snapshot
xMSannotator: An R Package for Network-Based Annotation of High-Resolution Metabolomics Data
inferredcites →https://doi.org/10.1038/nprot.2007.95openalex-snapshot
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
inferredcites →https://doi.org/10.1039/b901179jopenalex-snapshot
Mass spectrometry tools and metabolite-specific databases for molecular identification in metabolomics
inferredcites →https://doi.org/10.1074/mcp.m110.006353openalex-snapshot
A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas
inferredcites →https://doi.org/10.1074/mcp.r110.000133openalex-snapshot
mzML—a Community Standard for Mass Spectrometry Data
inferredcites →https://doi.org/10.1093/bioinformatics/btu019openalex-snapshot
ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/gkl923openalex-snapshot
HMDB: the Human Metabolome Database
inferredcites →https://doi.org/10.1093/nar/gkm900openalex-snapshot
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
inferredcites →https://doi.org/10.1093/nar/gkp1002openalex-snapshot
SMPDB: The Small Molecule Pathway Database
inferredcites →https://doi.org/10.1093/nar/gkv1164openalex-snapshot
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
inferredcites →https://doi.org/10.1104/pp.106.078428openalex-snapshot
A Liquid Chromatography-Mass Spectrometry-Based Metabolome Database for Tomato
inferredcites →https://doi.org/10.1186/1471-2105-10-227openalex-snapshot
Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'
inferredcites →https://doi.org/10.1186/1471-2105-11-5openalex-snapshot
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
inferredcites →https://doi.org/10.1289/ehp.112-a410openalex-snapshot
Metabolomics: what's happening downstream of DNA.
inferredcites →https://doi.org/10.5281/zenodo.1204455openalex-snapshot
AberystwythSystemsBiology/DIMEpy: Sort of a pre-release, but not a release.
inferredcites →https://doi.org/10.6026/97320630005361openalex-snapshot
Seaweed metabolite database (SWMD): A database of natural compounds from marine algae

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11306-020-01657-3openalex-snapshot
Software tools, databases and resources in metabolomics: updates from 2018 to 2019
inferred← citeshttps://doi.org/10.1021/acs.jproteome.4c00646openalex-snapshot
Recent Developments in Single-Cell Metabolomics by Mass Spectrometry─A Perspective
inferred← citeshttps://doi.org/10.1093/aob/mcaf243openalex-snapshot
Pre-harvest heat stress affects rocket salad leaf transcription and metabolism at harvest and after chilled postharvest storage
inferred← citeshttps://doi.org/10.1111/pce.14140openalex-snapshot
Nitrate mediated resistance against Fusarium infection in cucumber plants acts via photorespiration
inferred← citeshttps://doi.org/10.3390/ijms222111433openalex-snapshot
Non-Targeted Metabolite Profiling Reveals Host Metabolomic Reprogramming during the Interaction of Black Pepper with Phytophthora capsici
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