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Inferring Population Structure and Admixture Proportions in Low Depth NGS Data
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/gepi.20064openalex-snapshot
Estimation of individual admixture: Analytical and study design considerations
inferredcites →https://doi.org/10.1002/gepi.21636openalex-snapshot
Association Testing for Next‐Generation Sequencing Data Using Score Statistics
inferredcites →https://doi.org/10.1007/bf02293557openalex-snapshot
Determining the Number of Components from the Matrix of Partial Correlations
inferredcites →https://doi.org/10.1016/j.ajhg.2015.11.022openalex-snapshot
Model-free Estimation of Recent Genetic Relatedness
inferredcites →https://doi.org/10.1016/j.ajhg.2015.12.022openalex-snapshot
Fast Principal-Component Analysis Reveals Convergent Evolution of ADH1B in Europe and East Asia
inferredcites →https://doi.org/10.1038/44565openalex-snapshot
Learning the parts of objects by non-negative matrix factorization
inferredcites →https://doi.org/10.1038/hdy.2011.26openalex-snapshot
Investigating population stratification and admixture using eigenanalysis of dense genotypes
inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot
A map of human genome variation from population-scale sequencing
inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot
An integrated map of genetic variation from 1,092 human genomes
inferredcites →https://doi.org/10.1038/ng.139openalex-snapshot
Interpreting principal component analyses of spatial population genetic variation
inferredcites →https://doi.org/10.1038/ng1337openalex-snapshot
The effects of human population structure on large genetic association studies
inferredcites →https://doi.org/10.1038/ng1847openalex-snapshot
Principal components analysis corrects for stratification in genome-wide association studies
inferredcites →https://doi.org/10.1038/nrg2626openalex-snapshot
Sequencing technologies — the next generation
inferredcites →https://doi.org/10.1038/nrg2813openalex-snapshot
New approaches to population stratification in genome-wide association studies
inferredcites →https://doi.org/10.1038/nrg2986openalex-snapshot
Genotype and SNP calling from next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu041openalex-snapshot
ngsTools: methods for population genetics analyses from next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btv641openalex-snapshot
Probabilistic models of genetic variation in structured populations applied to global human studies
inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot
Fast model-based estimation of ancestry in unrelated individuals
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.157388.113openalex-snapshot
Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation
inferredcites →https://doi.org/10.1109/icassp.2018.8461325openalex-snapshot
Stochastic Variance Reduced Multiplicative Update for Nonnegative Matrix Factorization
inferredcites →https://doi.org/10.1109/mcse.2011.37openalex-snapshot
The NumPy Array: A Structure for Efficient Numerical Computation
inferredcites →https://doi.org/10.1109/mlsp.2016.7738818openalex-snapshot
Mini-batch stochastic approaches for accelerated multiplicative updates in nonnegative matrix factorisation with beta-divergence
inferredcites →https://doi.org/10.1111/1755-0998.12592openalex-snapshot
pcadapt : an R package to perform genome scans for selection based on principal component analysis
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1126/science.296.5566.261bopenalex-snapshot
A Human Genome Diversity Cell Line Panel
inferredcites →https://doi.org/10.1126/science.356262openalex-snapshot
Synthetic Maps of Human Gene Frequencies in Europeans
inferredcites →https://doi.org/10.1162/neco_a_00256openalex-snapshot
Accelerated Multiplicative Updates and Hierarchical ALS Algorithms for Nonnegative Matrix Factorization
inferredcites →https://doi.org/10.1186/1471-2105-12-231openalex-snapshot
Estimation of allele frequency and association mapping using next-generation sequencing data
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot
Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.pone.0037558openalex-snapshot
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
inferredcites →https://doi.org/10.1534/genetics.113.154138openalex-snapshot
Estimating Individual Admixture Proportions from Next Generation Sequencing Data
inferredcites →https://doi.org/10.1534/genetics.113.154740openalex-snapshot
Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data
inferredcites →https://doi.org/10.1534/genetics.113.160572openalex-snapshot
Fast and Efficient Estimation of Individual Ancestry Coefficients
inferredcites →https://doi.org/10.1534/genetics.116.189985openalex-snapshot
Inferring Heterozygosity from Ancient and Low Coverage Genomes
inferredcites →https://doi.org/10.2202/1544-6115.1493openalex-snapshot
Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106572openalex-snapshot
Multiple auto- and allopolyploidisations marked the Pleistocene history of the widespread Eurasian steppe plant Astragalus onobrychis (Fabaceae)
inferred← citeshttps://doi.org/10.1101/651695openalex-snapshot
Introgression of Austrian fire-bellied toads ( Bombina bombina ) into northern German populations confirmed by complete mitochondrial genomes and transcriptome-wide Single Nucleotide Polymorphisms (SNPs)
inferred← citeshttps://doi.org/10.1111/1755-0998.13019openalex-snapshot
Testing for Hardy–Weinberg equilibrium in structured populations using genotype or low‐depth next generation sequencing data
inferred← citeshttps://doi.org/10.1111/mec.16535openalex-snapshot
Parallel recolonizations generate distinct genomic sectors in kelp following high‐magnitude earthquake disturbance
inferred← citeshttps://doi.org/10.1126/sciadv.abc6318openalex-snapshot
Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts
inferred← citeshttps://doi.org/10.1186/s12864-019-5685-2openalex-snapshot
Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle
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