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High coverage genome sequencing and identification of genomic variants in Bengal tiger ( Panthera tigris tigris )

https://doi.org/10.1101/306399
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1506s45openalex-snapshot
BreakDancer: Identification of Genomic Structural Variation from Paired‐End Read Mapping
inferredcites →https://doi.org/10.1002/humu.22031openalex-snapshot
Confirmation of association of FCGR3B but not FCGR3A copy number with susceptibility to autoantibody positive rheumatoid arthritis
inferredcites →https://doi.org/10.1016/j.pneurobio.2012.07.005openalex-snapshot
Copy number variations in neurodevelopmental disorders
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1038/nature05329openalex-snapshot
Global variation in copy number in the human genome
inferredcites →https://doi.org/10.1038/nature12323openalex-snapshot
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
inferredcites →https://doi.org/10.1038/ncomms1582openalex-snapshot
The evolution of sensory divergence in the context of limited gene flow in the bumblebee bat
inferredcites →https://doi.org/10.1038/ncomms3433openalex-snapshot
The tiger genome and comparative analysis with lion and snow leopard genomes
inferredcites →https://doi.org/10.1038/ng1695openalex-snapshot
Common deletions and SNPs are in linkage disequilibrium in the human genome
inferredcites →https://doi.org/10.1038/ng1697openalex-snapshot
A high-resolution survey of deletion polymorphism in the human genome
inferredcites →https://doi.org/10.1038/ng2054openalex-snapshot
Mutational and selective effects on copy-number variants in the human genome
inferredcites →https://doi.org/10.1038/nm0106-75openalex-snapshot
Diabetes and obesity: the twin epidemics
inferredcites →https://doi.org/10.1038/srep19787openalex-snapshot
Whole-genome sequencing of the endangered bovine species Gayal (Bos frontalis) provides new insights into its genetic features
inferredcites →https://doi.org/10.1073/pnas.1211990110openalex-snapshot
Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar
inferredcites →https://doi.org/10.1093/acprof:oso/9780199214211.001.0001openalex-snapshot
Evolutionary Conservation Genetics
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/gbe/evr132openalex-snapshot
A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar
inferredcites →https://doi.org/10.1101/gr.105403.110openalex-snapshot
Analysis of copy number variations among diverse cattle breeds
inferredcites →https://doi.org/10.1101/gr.133967.111openalex-snapshot
Copy number variation of individual cattle genomes using next-generation sequencing
inferredcites →https://doi.org/10.1101/gr.6380007openalex-snapshot
Initial sequence and comparative analysis of the cat genome
inferredcites →https://doi.org/10.1111/cea.12060openalex-snapshot
Copy number variation prevalence in known asthma genes and their impact on asthma susceptibility
inferredcites →https://doi.org/10.1111/eva.12193openalex-snapshot
How and why should we implement genomics into conservation?
inferredcites →https://doi.org/10.1111/j.1365-2052.2012.02373.xopenalex-snapshot
Detection of copy number variants in the horse genome and examination of their association with recurrent laryngeal neuropathy
inferredcites →https://doi.org/10.1126/science.1098918openalex-snapshot
Large-Scale Copy Number Polymorphism in the Human Genome
inferredcites →https://doi.org/10.1155/2016/4712487openalex-snapshot
How Can Genomic Tools Contribute to the Conservation of Endangered Organisms
inferredcites →https://doi.org/10.1186/1471-2164-14-487openalex-snapshot
Analysis of copy number variants by three detection algorithms and their association with body size in horses
inferredcites →https://doi.org/10.1186/1471-2164-15-210openalex-snapshot
Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array
inferredcites →https://doi.org/10.1371/journal.pgen.1002903openalex-snapshot
Rare Copy Number Variants Contribute to Congenital Left-Sided Heart Disease
inferredcites →https://doi.org/10.1371/journal.pone.0087571openalex-snapshot
Enhancing Genome-Wide Copy Number Variation Identification by High Density Array CGH Using Diverse Resources of Pig Breeds

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/g3journal/jkac277openalex-snapshot
Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger ( Panthera uncia , Panthera pardus pardus , and Panthera tigris )
inferred← citeshttps://doi.org/10.1101/618785openalex-snapshot
First near complete haplotype phased genome assembly of River buffalo ( Bubalus bubalis )
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.