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Intestinal microbiota of whitefish ( Coregonus sp.) species pairs and their hybrids in natural and controlled environment

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Integrating molecular genetics and ecology in studies of adaptive radiation: whitefish, Coregonus sp., as a case study

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The Hologenome Concept: Human, Animal and Plant Microbiota

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Declining diversity of egg-associated bacteria during development of naturally spawned whitefish embryos (Coregonus spp.)

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Atlantic Salmon (Salmo salar L.) Gastrointestinal Microbial Community Dynamics in Relation to Digesta Properties and Diet

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Commensal Bacteria Aid Mate-selection in the Fruit Fly, Bactrocera dorsalis

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Microbiota Diversity Within and Between the Tissues of Two Wild Interbreeding Species

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Feeding 9 billion by 2050 – Putting fish back on the menu

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On the origin of mitosing cells

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Substance essential for metamorphosis of fish larvae extracted from Artemia

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Survival and growth of lake whitefish (Coregonus clupeaformis) larvae fed only formulated dry diets

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Do differences in the activities of carbohydrate metabolism enzymes between Lake Whitefish ecotypes match predictions from transcriptomic studies?

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Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection

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Maternal transfer of humoral specific and non-specific immune parameters to sea bream (Sparus aurata) larvae

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The long and winding road: identifying pig domestication through molar size and shape

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Metagenomics approach to the study of the gut microbiome structure and function in zebrafish Danio rerio fed with gluten formulated diet

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Speciation by symbiosis

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Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

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End of the beginning

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Evidence for a core gut microbiota in the zebrafish

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Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

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Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

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Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes

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Diet rapidly and reproducibly alters the human gut microbiome

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Combining next-generation sequencing and online databases for microsatellite development in non-model organisms

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papa (package for the analysis of parental allocation): a computer program for simulated and real parental allocation

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Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota

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Detecting immigration by using multilocus genotypes

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Parallel Speciation by Natural Selection

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Ecological Character Displacement in Adaptive Radiation

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A Symbiotic View of Life: We Have Never Been Individuals

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UCHIME improves sensitivity and speed of chimera detection

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Inference of Population Structure Using Multilocus Genotype Data

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GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection

inferredcites →https://doi.org/10.1093/molbev/msn235openalex-snapshot

Candidate Genes and Adaptive Radiation: Insights from Transcriptional Adaptation to the Limnetic Niche among Coregonine Fishes (Coregonus spp., Salmonidae)

inferredcites →https://doi.org/10.1093/molbev/msp017openalex-snapshot

Gene Expression Divergence and Hybrid Misexpression between Lake Whitefish Species Pairs (Coregonus spp. Salmonidae)

inferredcites →https://doi.org/10.1093/molbev/msu069openalex-snapshot

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

inferredcites →https://doi.org/10.1093/nar/25.22.4692openalex-snapshot

Universal and rapid salt-extraction of high quality genomic DNA for PCR- based techniques

inferredcites →https://doi.org/10.1093/nar/gks808openalex-snapshot

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

inferredcites →https://doi.org/10.1098/rspb.1998.0394openalex-snapshot

Experimental evidence for reduced hybrid viability between dwarf and normal ecotypes of lake whitefish (Coregonus clupeaformis Mitchill)

inferredcites →https://doi.org/10.1098/rstb.2009.0274openalex-snapshot

On the origin of species: insights from the ecological genomics of lake whitefish

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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

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Evaluating the core microbiota in complex communities: A systematic investigation

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Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

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Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from Q uébec, C anada

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THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

inferredcites →https://doi.org/10.1111/evo.12727openalex-snapshot

Adaptation and acclimation of aerobic exercise physiology in Lake Whitefish ecotypes (Coregonus clupeaformis)

inferredcites →https://doi.org/10.1111/j.1365-2109.2010.02546.xopenalex-snapshot

Role of gastrointestinal microbiota in fish

inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03062.xopenalex-snapshot

Parallel evolution of ecomorphological traits in the European whitefishCoregonus lavaretus(L.) species complex during postglacial times

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03696.xopenalex-snapshot

The transcriptomics of life‐history trade‐offs in whitefish species pairs ( Coregonus sp.)

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05552.xopenalex-snapshot

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05561.xopenalex-snapshot

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.)

inferredcites →https://doi.org/10.1111/j.1420-9101.2007.01304.xopenalex-snapshot

Parallel evolution of lake whitefish dwarf ecotypes in association with limnological features of their adaptive landscape

inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02121.xopenalex-snapshot

Role of epibenthic resource opportunities in the parallel evolution of lake whitefish species pairs (Coregonus sp.)

inferredcites →https://doi.org/10.1111/jam.12475openalex-snapshot

Characterization of the gut microbiota of three commercially valuable warmwater fish species

inferredcites →https://doi.org/10.1111/jam.12626openalex-snapshot

Do the intestinal microbiotas differ between paddlefish (Polyodon spathala ) and bighead carp (Aristichthys nobilis ) reared in the same pond?

inferredcites →https://doi.org/10.1111/jeb.12374openalex-snapshot

Microbiome investigation in the ecological speciation context of lake whitefish (Coregonus clupeaformis) using next‐generation sequencing

inferredcites →https://doi.org/10.1111/mec.12127openalex-snapshot

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)

inferredcites →https://doi.org/10.1111/mec.12699openalex-snapshot

Intestinal microbiota in fishes: what's known and what's not

inferredcites →https://doi.org/10.1111/mec.13847openalex-snapshot

Convergence in organ size but not energy metabolism enzyme activities among wild Lake Whitefish (Coregonus clupeaformis) species pairs

inferredcites →https://doi.org/10.1111/oik.03900openalex-snapshot

Life history and eco‐evolutionary dynamics in light of the gut microbiota

inferredcites →https://doi.org/10.1111/raq.12162openalex-snapshot

Strategies to modulate the intestinal microbiota of Tilapia (Oreochromis sp.) in aquaculture: a review

inferredcites →https://doi.org/10.1126/science.1133755openalex-snapshot

Five Rules for the Evolution of Cooperation

inferredcites →https://doi.org/10.1126/science.291.5505.881openalex-snapshot

Molecular Analysis of Commensal Host-Microbial Relationships in the Intestine

inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/mbio.01395-15openalex-snapshot

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

inferredcites →https://doi.org/10.1128/mbio.01785-15openalex-snapshot

Speciation by Symbiosis: the Microbiome and Behavior

inferredcites →https://doi.org/10.1128/mbio.01785-16openalex-snapshot

Identification of YbeY-Protein Interactions Involved in 16S rRNA Maturation and Stress Regulation in Escherichia coli

inferredcites →https://doi.org/10.1139/f79-175openalex-snapshot

Morphological and Ecological Divergence Within the Lake Whitefish (Coregonus clupeaformis) Species Complex in Yukon Territory

inferredcites →https://doi.org/10.1186/preaccept-4447676281370168openalex-snapshot

Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: amplicon pyrosequences on algal farms and stomach contents

inferredcites →https://doi.org/10.1186/s12862-016-0732-yopenalex-snapshot

Adaptation and acclimation of traits associated with swimming capacity in Lake Whitefish (coregonus clupeaformis) ecotypes

inferredcites →https://doi.org/10.1186/s40168-016-0190-1openalex-snapshot

Environment shapes the fecal microbiome of invasive carp species

inferredcites →https://doi.org/10.1186/s40168-018-0427-2openalex-snapshot

Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

inferredcites →https://doi.org/10.1371/journal.pcbi.1000352openalex-snapshot

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

inferredcites →https://doi.org/10.1371/journal.pone.0127462openalex-snapshot

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

inferredcites →https://doi.org/10.1534/g3.115.019067openalex-snapshot

RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (Coregonus clupeaformis) Species Pairs

inferredcites →https://doi.org/10.1534/genetics.106.061457openalex-snapshot

Linkage Maps of thedwarfand Normal Lake Whitefish (Coregonus clupeaformis) Species Complex and Their Hybrids Reveal the Genetic Architecture of Population Divergence

inferredcites →https://doi.org/10.2307/1934145openalex-snapshot

The Nonconcept of Species Diversity: A Critique and Alternative Parameters

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.3389/fmicb.2014.00207openalex-snapshot

Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries

inferredcites →https://doi.org/10.5860/choice.42-1547openalex-snapshot

Measuring biological diversity

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2020.02.10.941245openalex-snapshot

Association of gut microbiota with metabolism in juvenile Atlantic Salmon

inferred← citeshttps://doi.org/10.1186/s40168-020-00938-2openalex-snapshot

Association of gut microbiota with metabolism in juvenile Atlantic salmon

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