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Neolithic and Medieval virus genomes reveal complex evolution of Hepatitis B

https://doi.org/10.1101/315531
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/hep.25852openalex-snapshot
Tracing hepatitis B virus to the 16th century in a Korean mummy
inferredcites →https://doi.org/10.1007/s00239-007-0054-1openalex-snapshot
Bayesian Estimates of the Evolutionary Rate and Age of Hepatitis B Virus
inferredcites →https://doi.org/10.1016/j.bjid.2013.12.006openalex-snapshot
Theories about evolutionary origins of human hepatitis B virus in primates and humans
inferredcites →https://doi.org/10.1016/j.coviro.2016.01.015openalex-snapshot
Bat hepadnaviruses and the origins of primate hepatitis B viruses
inferredcites →https://doi.org/10.1016/j.jas.2013.07.004openalex-snapshot
Accurate sex identification of ancient human remains using DNA shotgun sequencing
inferredcites →https://doi.org/10.1016/j.meegid.2015.08.024openalex-snapshot
Hepatitis B virus intergenotypic recombinants worldwide: An overview
inferredcites →https://doi.org/10.1016/j.meegid.2017.08.015openalex-snapshot
Heterogeneous recombination among Hepatitis B virus genotypes
inferredcites →https://doi.org/10.1016/j.tig.2017.05.005openalex-snapshot
Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication
inferredcites →https://doi.org/10.1038/nature14317openalex-snapshot
Massive migration from the steppe was a source for Indo-European languages in Europe
inferredcites →https://doi.org/10.1038/nature16152openalex-snapshot
Genome-wide patterns of selection in 230 ancient Eurasians
inferredcites →https://doi.org/10.1038/ng.2906openalex-snapshot
Pathogens and host immunity in the ancient human oral cavity
inferredcites →https://doi.org/10.1038/ng1847openalex-snapshot
Principal components analysis corrects for stratification in genome-wide association studies
inferredcites →https://doi.org/10.1038/s41559-017-0446-6openalex-snapshot
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico
inferredcites →https://doi.org/10.1073/pnas.1314445110openalex-snapshot
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bib/bbs017openalex-snapshot
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/molbev/msh018openalex-snapshot
Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/ve/vev003openalex-snapshot
RDP4: Detection and analysis of recombination patterns in virus genomes
inferredcites →https://doi.org/10.1101/cshperspect.a021360openalex-snapshot
Origins and Evolution of Hepatitis B Virus and Hepatitis D Virus
inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
inferredcites →https://doi.org/10.1111/zoj.12084openalex-snapshot
Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae)
inferredcites →https://doi.org/10.1126/science.1238286openalex-snapshot
Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae
inferredcites →https://doi.org/10.1128/jvi.73.1.152-160.1999openalex-snapshot
Full-Length Human Immunodeficiency Virus Type 1 Genomes from Subtype C-Infected Seroconverters in India, with Evidence of Intersubtype Recombination
inferredcites →https://doi.org/10.1128/jvi.79.24.15467-15476.2005openalex-snapshot
Recombination in the Genesis and Evolution of Hepatitis B Virus Genotypes
inferredcites →https://doi.org/10.1146/annurev-genom-091416-035526openalex-snapshot
A Robust Framework for Microbial Archaeology
inferredcites →https://doi.org/10.1186/s13059-016-0918-zopenalex-snapshot
EAGER: efficient ancient genome reconstruction
inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot
Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.ppat.1006750openalex-snapshot
The paradox of HBV evolution as revealed from a 16th century mummy
inferredcites →https://doi.org/10.3748/wjg.v13.i1.14openalex-snapshot
Hepatitis B virus taxonomy and hepatitis B virus genotypes
inferredcites →https://doi.org/10.3851/imp2656openalex-snapshot
Evolutionary Rates and Hbv: Issues of Rate Estimation with Bayesian Molecular Methods

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/cld.989openalex-snapshot
We Are All Africans: A Highly Personal Migratory View of the History of Hepatitis B
inferred← citeshttps://doi.org/10.1016/j.antiviral.2020.104973openalex-snapshot
HBV evolution and genetic variability: Impact on prevention, treatment and development of antivirals
inferred← citeshttps://doi.org/10.1038/s41415-026-9551-8openalex-snapshot
The pulp: a time capsule for history
inferred← citeshttps://doi.org/10.3390/microorganisms9081787openalex-snapshot
Hepatitis B Virus DNA Integration, Chronic Infections and Hepatocellular Carcinoma
inferred← citeshttps://doi.org/10.7287/peerj.10947v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10947v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10947v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12784v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study (v0.1)"
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