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Easily phylotyping E. coli via the EzClermont web app and command-line tool

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00248-010-9717-3openalex-snapshot

Comparison of 61 Sequenced Escherichia coli Genomes

inferredcites →https://doi.org/10.1038/s41598-017-03489-zopenalex-snapshot

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli

inferredcites →https://doi.org/10.1073/pnas.1105168108openalex-snapshot

Whole-genome phylogeny of Escherichia coli / Shigella group by feature frequency profiles (FFPs)

inferredcites →https://doi.org/10.1093/bioinformatics/btv271openalex-snapshot

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

inferredcites →https://doi.org/10.1099/mgen.0.000192openalex-snapshot

ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping

inferredcites →https://doi.org/10.1099/mic.0.000063openalex-snapshot

Guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes

inferredcites →https://doi.org/10.1099/mic.0.000367openalex-snapshot

Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

inferredcites →https://doi.org/10.1099/mic.0.055459-0openalex-snapshot

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

inferredcites →https://doi.org/10.1101/613554openalex-snapshot

The user’s guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of Salmonella , the phylogeny of ancient and modern Yersinia pestis genomes, and the core genomic diversity of all Escherichia

inferredcites →https://doi.org/10.1109/csb.2004.74openalex-snapshot

EcMLST: an online database for multi locus sequence typing of pathogenic Escherichia coli

inferredcites →https://doi.org/10.1111/1758-2229.12019openalex-snapshot

The C lermont E scherichia coli phylo‐typing method revisited: improvement of specificity and detection of new phylo‐groups

inferredcites →https://doi.org/10.1111/2041-210x.12628openalex-snapshot

ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data

inferredcites →https://doi.org/10.1128/aem.06663-11openalex-snapshot

High-Resolution Two-Locus Clonal Typing of Extraintestinal Pathogenic Escherichia coli

inferredcites →https://doi.org/10.1128/aem.66.10.4555-4558.2000openalex-snapshot

Rapid and Simple Determination of the Escherichia coli Phylogenetic Group

inferredcites →https://doi.org/10.1128/jcm.01946-15openalex-snapshot

Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium

inferredcites →https://doi.org/10.1371/journal.pgen.1007261openalex-snapshot

A genomic overview of the population structure of Salmonella

inferredcites →https://doi.org/10.1371/journal.ppat.1002776openalex-snapshot

Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

inferredcites →https://doi.org/10.2353/jmoldx.2010.090035openalex-snapshot

The Effect of Primer-Template Mismatches on the Detection and Quantification of Nucleic Acids Using the 5′ Nuclease Assay

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.psj.2019.11.043openalex-snapshot

Impact of short-term storage on the quantity of extended-spectrum beta-lactamase–producing Escherichia coli in broiler litter under practical conditions

inferred← citeshttps://doi.org/10.1101/613554openalex-snapshot

inferred← citeshttps://doi.org/10.1101/gr.251678.119openalex-snapshot

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

inferred← citeshttps://doi.org/10.1128/aem.00807-24openalex-snapshot

Diversity and phage sensitivity to phages of porcine enterotoxigenic Escherichia coli

inferred← citeshttps://doi.org/10.1128/mra.00351-19openalex-snapshot

Draft Genome Sequences of Antibiotic-Resistant Escherichia coli Isolates from U.S. Wastewater Treatment Plants

inferred← citeshttps://doi.org/10.1128/msystems.00079-23openalex-snapshot

Targeted depletion of pks + bacteria from a fecal microbiota using specific antibodies

inferred← citeshttps://doi.org/10.33612/diss.147006916openalex-snapshot

Microbes on the move: infectious diseases in asylum seekers: Screening and vaccination policies

inferred← citeshttps://doi.org/10.3389/fmicb.2021.642125openalex-snapshot

Comparative Genomics of Emerging Lineages and Mobile Resistomes of Contemporary Broiler Strains of Salmonella Infantis and E. coli

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