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Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1038/gim.2015.199openalex-snapshot
Low-pass whole-genome sequencing in clinical cytogenetics: a validated approach
inferredcites →https://doi.org/10.1038/gim.2017.170openalex-snapshot
Identification of balanced chromosomal rearrangements previously unknown among participants in the 1000 Genomes Project: implications for interpretation of structural variation in genomes and the future of clinical cytogenetics
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature11236openalex-snapshot
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells
inferredcites →https://doi.org/10.1038/nbt.1739openalex-snapshot
Whole-genome molecular haplotyping of single cells
inferredcites →https://doi.org/10.1038/nbt.1740openalex-snapshot
Haplotype-resolved genome sequencing of a Gujarati Indian individual
inferredcites →https://doi.org/10.1038/nbt.2728openalex-snapshot
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
inferredcites →https://doi.org/10.1038/nbt.2833openalex-snapshot
Whole-genome haplotyping using long reads and statistical methods
inferredcites →https://doi.org/10.1038/nbt.2835openalex-snapshot
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
inferredcites →https://doi.org/10.1038/nbt.3432openalex-snapshot
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
inferredcites →https://doi.org/10.1038/nbt.3897openalex-snapshot
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube
inferredcites →https://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferredcites →https://doi.org/10.1038/ng.3119openalex-snapshot
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing
inferredcites →https://doi.org/10.1038/ng1741openalex-snapshot
Long-range polony haplotyping of individual human chromosome molecules
inferredcites →https://doi.org/10.1038/nmeth.1443openalex-snapshot
Direct determination of molecular haplotypes by chromosome microdissection
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nmeth.3454openalex-snapshot
Assembly and diploid architecture of an individual human genome via single-molecule technologies
inferredcites →https://doi.org/10.1038/nnano.2010.177openalex-snapshot
Replication of individual DNA molecules under electronic control using a protein nanopore
inferredcites →https://doi.org/10.1038/protex.2018.116openalex-snapshot
A simple bead-based method for generating cost-effective co-barcoded sequence reads
inferredcites →https://doi.org/10.1039/b902292aopenalex-snapshot
Elongation and migration of single DNA molecules in microchannels using oscillatory shear flows
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/dnares/dsy037openalex-snapshot
3′ Branch ligation: a novel method to ligate non-complementary DNA to recessed or internal 3′OH ends in DNA or RNA
inferredcites →https://doi.org/10.1093/gigascience/giw015openalex-snapshot
Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
inferredcites →https://doi.org/10.1093/gigascience/gix024openalex-snapshot
A reference human genome dataset of the BGISEQ-500 sequencer
inferredcites →https://doi.org/10.1093/gigascience/gix049openalex-snapshot
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
inferredcites →https://doi.org/10.1093/nar/gkr1042openalex-snapshot
Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques
inferredcites →https://doi.org/10.1101/023754openalex-snapshot
Comparing Variant Call Files for Performance Benchmarking of Next-Generation Sequencing Variant Calling Pipelines
inferredcites →https://doi.org/10.1101/115717openalex-snapshot
The Sentieon Genomics Tools - A fast and accurate solution to variant calling from next-generation sequence data
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.125047.111openalex-snapshot
A comprehensively molecular haplotype-resolved genome of a European individual
inferredcites →https://doi.org/10.1101/gr.213462.116openalex-snapshot
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
inferredcites →https://doi.org/10.1126/science.1079700openalex-snapshot
Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations
inferredcites →https://doi.org/10.1126/science.1181498openalex-snapshot
Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/gb-2008-9-3-r55openalex-snapshot
Genome assembly forensics: finding the elusive mis-assembly
inferredcites →https://doi.org/10.1186/s12864-017-3879-zopenalex-snapshot
Scaffolding of long read assemblies using long range contact information
inferredcites →https://doi.org/10.1186/s13148-016-0287-1openalex-snapshot
cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs
inferredcites →https://doi.org/10.1186/s13742-016-0128-3openalex-snapshot
Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus , a threespine stickleback parasite
inferredcites →https://doi.org/10.1186/s13742-016-0148-zopenalex-snapshot
The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes
inferredcites →https://doi.org/10.3389/fgene.2014.00466openalex-snapshot
Co-barcoded sequence reads from long DNA fragments: a cost-effective solution for “perfect genome” sequencing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101662openalex-snapshot
African Arowana Genome Provides Insights on Ancient Teleost Evolution
inferred← citeshttps://doi.org/10.1101/486092openalex-snapshot
CompStor Novos: a low cost yet fast assembly-based variant calling for personal genomes
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