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zetadiv : an R package for computing compositional change across multiple sites, assemblages or cases

https://doi.org/10.1101/324897
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Measuring continuous compositional change using decline and decay in zeta diversity
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WorldClim 2: new 1‐km spatial resolution climate surfaces for global land areas
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Temperature variation across Marion Island associated with a keystone plant species (Azorella selago Hook. (Apiaceae))
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Shape constrained additive models
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A multiple-site dissimilarity measure for species presence/absence data and its relationship with nestedness and turnover
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Levels of emergence in individual based models: Coping with scarcity of data and pattern redundancy
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On the scaling patterns of species spatial distribution and association
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How Should Beta-Diversity Inform Biodiversity Conservation?
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Occupancy frequency distributions: patterns, artefacts and mechanisms
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Coral reef diversity refutes the neutral theory of biodiversity
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The distance decay of similarity in biogeography and ecology
inferredcites →https://doi.org/10.1086/678125openalex-snapshot
Zeta Diversity as a Concept and Metric That Unifies Incidence-Based Biodiversity Patterns
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Studying beta diversity: ecological variation partitioning by multiple regression and canonical analysis
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A multiple-site similarity measure
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Health trajectories reveal the dynamic contributions of host genetic resistance and tolerance to infection outcome
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Pattern-oriented modelling: a ‘multi-scope’ for predictive systems ecology
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Cluster validity and uncertainty assessment for self‐organizing map pest profile analysis
inferredcites →https://doi.org/10.1111/2041-210x.12756openalex-snapshot
Multi‐site generalised dissimilarity modelling: using zeta diversity to differentiate drivers of turnover in rare and widespread species
inferredcites →https://doi.org/10.1111/geb.12442openalex-snapshot
The distribution and diversity of insular ants: do exotic species play by different rules?
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Performance of partitioning functional beta‐diversity indices: Influence of functional representation and partitioning methods
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The distance decay of similarity in ecological communities
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A general framework for the distance–decay of similarity in ecological communities
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Phylogenetic beta diversity: linking ecological and evolutionary processes across space in time
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Spatial mismatch and congruence between taxonomic, phylogenetic and functional diversity: the need for integrative conservation strategies in a changing world
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Partitioning the turnover and nestedness components of beta diversity
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GRADIENT ANALYSIS OF VEGETATION*
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Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment
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Measures, perceptions and scaling patterns of aggregated species distributions
inferredcites →https://doi.org/10.1111/j.1600-0587.2012.00124.xopenalex-snapshot
Multiple site dissimilarity quantifies compositional heterogeneity among several sites, while average pairwise dissimilarity may be misleading
inferredcites →https://doi.org/10.1111/j.1600-0587.2012.07348.xopenalex-snapshot
Collinearity: a review of methods to deal with it and a simulation study evaluating their performance
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Modeling species distributions by breaking the assumption of self‐similarity
inferredcites →https://doi.org/10.1111/jbi.12642openalex-snapshot
Characterizing common and range expanding species
inferredcites →https://doi.org/10.1126/science.1116681openalex-snapshot
Pattern-Oriented Modeling of Agent-Based Complex Systems: Lessons from Ecology
inferredcites →https://doi.org/10.1126/science.1182818openalex-snapshot
Valuing Common Species
inferredcites →https://doi.org/10.1126/science.1248484openalex-snapshot
Assemblage Time Series Reveal Biodiversity Change but Not Systematic Loss
inferredcites →https://doi.org/10.1214/ss/1177012761openalex-snapshot
Monotone Regression Splines in Action
inferredcites →https://doi.org/10.18820/9781928357063openalex-snapshot
The Prince Edward Islands: Land-Sea Interactions in a Changing Ecosystem
inferredcites →https://doi.org/10.18820/9781928357063/10openalex-snapshot
Spatial variation in the terrestrial bioticsystem
inferredcites →https://doi.org/10.1890/06-1736.1openalex-snapshot
PARTITIONING DIVERSITY INTO INDEPENDENT ALPHA AND BETA COMPONENTS
inferredcites →https://doi.org/10.1890/10-1426.1openalex-snapshot
The underpinnings of the relationship of species richness with space and time
inferredcites →https://doi.org/10.1890/11-1817.1openalex-snapshot
Proposing a resolution to debates on diversity partitioning
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Vegetation of the Great Smoky Mountains
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3354/meps245123openalex-snapshot
Latitudinal trends of species diversity in rocky intertidal herbivore assemblages: spatial scale and the relationship between local and regional species richness

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.73251openalex-snapshot
Evaluating Conservation Corridor Success for Rare and Common Dragonflies Using Zeta Diversity
inferred← citeshttps://doi.org/10.1002/ece3.9859openalex-snapshot
Two dominant forms of multisite similarity decline – Their origins and interpretation
inferred← citeshttps://doi.org/10.1002/ecy.2832openalex-snapshot
Measuring continuous compositional change using decline and decay in zeta diversity
inferred← citeshttps://doi.org/10.1002/edn3.257openalex-snapshot
Environmental DNA in a global biodiversity hotspot: Lessons from coral reef fish diversity across the Indonesian archipelago
inferred← citeshttps://doi.org/10.1002/edn3.70063openalex-snapshot
Investigating Fine‐Scale Breeding Habitat Use by Amphibians in a Continuous Wetland Using Environmental DNA
inferred← citeshttps://doi.org/10.1007/s00248-022-02000-0openalex-snapshot
Stronger Geographic Limitations Shape a Rapid Turnover and Potentially Highly Connected Network of Core Bacteria on Microplastics
inferred← citeshttps://doi.org/10.1007/s00338-023-02418-zopenalex-snapshot
An extreme storm decreases reef fish abundance and richness but does not impact spatial heterogeneity
inferred← citeshttps://doi.org/10.1007/s10750-024-05690-4openalex-snapshot
Using alpha, beta, and zeta diversity to map the structure and function of fish community in the central East China Sea
inferred← citeshttps://doi.org/10.1007/s11252-026-01919-3openalex-snapshot
Drivers of compositional turnover of the non-native urban flora in the Western Cape, South Africa
inferred← citeshttps://doi.org/10.1007/s11252-026-01930-8openalex-snapshot
Urban heat Islands shape epiphytic communities of lichens and bryophytes
inferred← citeshttps://doi.org/10.1016/j.ecocom.2020.100833openalex-snapshot
Floristic and functional identity of rupestrian grasslands as a subsidy for environmental restoration and policy
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.178252openalex-snapshot
Coastal eutrophication transforms shallow micro-benthic reef communities
inferred← citeshttps://doi.org/10.1021/acsestwater.5c01150openalex-snapshot
Dispersal, Establishment, and Functional Shifts of Runoff-Derived Bacterial Taxa Shaping Microbial Diversity in Infiltration-Based Aquifer Recharge Systems
inferred← citeshttps://doi.org/10.1038/s41559-022-01865-1openalex-snapshot
Naturalized alien floras still carry the legacy of European colonialism
inferred← citeshttps://doi.org/10.1038/s43247-026-03723-5openalex-snapshot
Millennial-scale lags in plant assembly are associated with topographic connectivity on the eastern Tibetan Plateau
inferred← citeshttps://doi.org/10.1111/1440-1703.12231openalex-snapshot
Processes driving understory community dynamics in Ulleungdo Island broadleaved forest, South Korea
inferred← citeshttps://doi.org/10.1111/cobi.13815openalex-snapshot
Impact of marine protected areas on temporal stability of fish species diversity
inferred← citeshttps://doi.org/10.1111/ddi.13365openalex-snapshot
Exploring the biotic homogenization and diversity resistance hypotheses: The understorey of non‐native and native woodland canopies in three urban areas of Europe
inferred← citeshttps://doi.org/10.1111/fwb.13894openalex-snapshot
Overview of regional‐scale diversity patterns of freshwater algae in a Neotropical bromeliad ecosystem
inferred← citeshttps://doi.org/10.1111/geb.13530openalex-snapshot
Spatial compositional turnover varies with trophic level and body size in marine assemblages of micro‐ and macroorganisms
inferred← citeshttps://doi.org/10.1111/icad.12718openalex-snapshot
Drivers of compositional turnover in narrow‐ranged and widespread dragonflies and damselflies in Africa
inferred← citeshttps://doi.org/10.1111/jbi.15060openalex-snapshot
What Defines the Groupwise Compositional Turnover of Eurasian Phylloscopus Warblers? Insights From Zeta (ζ) Diversity and MS ‐ GDM
inferred← citeshttps://doi.org/10.1111/jbi.70128openalex-snapshot
DNA Metabarcoding Reveals Tardigrades' Diversity and Dispersal Patterns in European Freshwater Rock Pools
inferred← citeshttps://doi.org/10.1111/mec.16860openalex-snapshot
Zeta diversity differentiates factors driving community assembly of rare and common ectomycorrhizal fungi
inferred← citeshttps://doi.org/10.1111/mec.70479openalex-snapshot
Spatial Complexity and Rare‐Taxon Turnover Structures Benthic Coral Reef eDNA Communities
inferred← citeshttps://doi.org/10.1128/jvi.00541-25openalex-snapshot
Sources and sinks of influenza A virus genomic diversity in swine from 2009 to 2022 in the United States
inferred← citeshttps://doi.org/10.15517/wfnx9b94openalex-snapshot
Altitudinal distribution of epigeous ants (Hymenoptera: Formicidae) along the slopes of mountain ranges adjacent to the Cauca River valley, Colombia
inferred← citeshttps://doi.org/10.32614/cran.package.zetadivopenalex-snapshot
zetadiv: Functions to Compute Compositional Turnover Using Zeta Diversity
inferred← citeshttps://doi.org/10.3390/f17030340openalex-snapshot
Fungal Diversity and Its Relationship with Environmental Factors in Oaxaca and Surrounding States in Southern Mexico
inferred← citeshttps://doi.org/10.3390/insects12040295openalex-snapshot
Termite Assemblage and Damage on Tree Trunks in Fast-Growing Teak Plantations of Different Age: A Case Study in West Java, Indonesia
inferred← citeshttps://doi.org/10.3897/bdj.10.e90281openalex-snapshot
Comparative diversity of vascular plants in black alder floodplain and swamp forests of Central European biogeographical regions
inferred← citeshttps://doi.org/10.70675/8b4a931azb63cz456azb2f7z4766175f6c84openalex-snapshot
Les premiers stades de vie des poissons dans le SO de Madagascar : éléments pour une meilleure connaissance de la biodiversité et une meilleure gestion des ressources exploitées
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