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The African Bullfrog ( Pyxicephalus adspersus ) genome unites the two ancestral ingredients for making vertebrate sex chromosomes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1003s00openalex-snapshot

Using MUMmer to Identify Similar Regions in Large Sequence Sets

inferredcites →https://doi.org/10.1002/ajmg.a.33849openalex-snapshot

Linking chromosome abnormality and copy number variation

inferredcites →https://doi.org/10.1002/jez.1402640203openalex-snapshot

Gonadal involvement in sexual size dimorphism in the African bullfrog (Pyxicephalus adspersus)

inferredcites →https://doi.org/10.1007/978-1-4939-1652-8_3openalex-snapshot

BAC Sequencing Using Pooled Methods

inferredcites →https://doi.org/10.1007/978-3-642-31442-1_18openalex-snapshot

Polyploidization and Sex Chromosome Evolution in Amphibians

inferredcites →https://doi.org/10.1007/978-3-642-88178-7openalex-snapshot

Sex Chromosomes and Sex-Linked Genes

inferredcites →https://doi.org/10.1007/978-4-431-92691-7_20openalex-snapshot

Reconstruction of the Vertebrate Ancestral Genome Reveals Dynamic Genome Reorganization in Early Vertebrates

inferredcites →https://doi.org/10.1007/bf00327567openalex-snapshot

Chromosome banding in amphibia

inferredcites →https://doi.org/10.1007/bf01991633openalex-snapshot

A frog with highly evolved sex chromosomes

inferredcites →https://doi.org/10.1007/s00412-015-0569-yopenalex-snapshot

Dynamics of vertebrate sex chromosome evolution: from equal size to giants and dwarfs

inferredcites →https://doi.org/10.1007/s10577-011-9266-8openalex-snapshot

Are some chromosomes particularly good at sex? Insights from amniotes

inferredcites →https://doi.org/10.1016/j.crvi.2016.05.010openalex-snapshot

Vertebrate sex-determining genes play musical chairs

inferredcites →https://doi.org/10.1016/j.cub.2006.08.021openalex-snapshot

Relationships between Vertebrate ZW and XY Sex Chromosome Systems

inferredcites →https://doi.org/10.1016/j.tig.2011.05.005openalex-snapshot

Are all sex chromosomes created equal?

inferredcites →https://doi.org/10.1016/j.tig.2013.07.005openalex-snapshot

Sex chromosome dosage compensation: definitely not for everyone

inferredcites →https://doi.org/10.1016/j.tree.2017.05.004openalex-snapshot

Why Sex? A Pluralist Approach Revisited

inferredcites →https://doi.org/10.1016/j.ymeth.2014.11.020openalex-snapshot

DISEASES: Text mining and data integration of disease–gene associations

inferredcites →https://doi.org/10.1038/75556openalex-snapshot

Gene Ontology: tool for the unification of biology

inferredcites →https://doi.org/10.1038/nature03154openalex-snapshot

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

inferredcites →https://doi.org/10.1038/nature09172openalex-snapshot

Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

inferredcites →https://doi.org/10.1038/nature10390openalex-snapshot

The genome of the green anole lizard and a comparative analysis with birds and mammals

inferredcites →https://doi.org/10.1038/nature13151openalex-snapshot

Origins and functional evolution of Y chromosomes across mammals

inferredcites →https://doi.org/10.1038/nature13206openalex-snapshot

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

inferredcites →https://doi.org/10.1038/nature14574openalex-snapshot

Sex reversal triggers the rapid transition from genetic to temperature-dependent sex

inferredcites →https://doi.org/10.1038/nature19840openalex-snapshot

Genome evolution in the allotetraploid frog Xenopus laevis

inferredcites →https://doi.org/10.1038/ng.2890openalex-snapshot

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

inferredcites →https://doi.org/10.1038/ng.3778openalex-snapshot

Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators

inferredcites →https://doi.org/10.1038/ng.991openalex-snapshot

Evidence for dosage compensation between the X chromosome and autosomes in mammals

inferredcites →https://doi.org/10.1038/ng1705openalex-snapshot

Dosage compensation of the active X chromosome in mammals

inferredcites →https://doi.org/10.1038/nm0106-47openalex-snapshot

How diabetes went to our heads

inferredcites →https://doi.org/10.1038/nrg.2015.2openalex-snapshot

Evolution of vertebrate sex chromosomes and dosage compensation

inferredcites →https://doi.org/10.1038/nrg.2017.60openalex-snapshot

Vertebrate sex determination: evolutionary plasticity of a fundamental switch

inferredcites →https://doi.org/10.1038/nrg1914openalex-snapshot

Evolution on the X chromosome: unusual patterns and processes

inferredcites →https://doi.org/10.1038/nrg2948openalex-snapshot

Sex-chromosome evolution: recent progress and the influence of male and female heterogamety

inferredcites →https://doi.org/10.1038/nrg3366openalex-snapshot

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

inferredcites →https://doi.org/10.1038/sdata.2014.15openalex-snapshot

Tree of Sex: A database of sexual systems

inferredcites →https://doi.org/10.1038/sj.hdy.6800697openalex-snapshot

Steps in the evolution of heteromorphic sex chromosomes

inferredcites →https://doi.org/10.1073/pnas.0605274103openalex-snapshot

Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes

inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

inferredcites →https://doi.org/10.1073/pnas.1207726109openalex-snapshot

Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/btt702openalex-snapshot

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/bioinformatics/btv661openalex-snapshot

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS

inferredcites →https://doi.org/10.1093/gbe/evr010openalex-snapshot

Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

inferredcites →https://doi.org/10.1093/gbe/evu035openalex-snapshot

Complete Dosage Compensation and Sex-Biased Gene Expression in the Moth Manduca sexta

inferredcites →https://doi.org/10.1093/gbe/evw263openalex-snapshot

Evolution of dosage compensation in Anolis carolinensis , a reptile with XX/XY chromosomal sex determination

inferredcites →https://doi.org/10.1093/gbe/evx031openalex-snapshot

Allele-Specific Expression Analysis Does Not Support Sex Chromosome Inactivation on the Chicken Z Chromosome

inferredcites →https://doi.org/10.1093/gbe/evx154openalex-snapshot

Evolution of Sex Chromosome Dosage Compensation in Animals: A Beautiful Theory, Undermined by Facts and Bedeviled by Details

inferredcites →https://doi.org/10.1093/jhered/esw053openalex-snapshot

Origin of Amniote Sex Chromosomes: An Ancestral Super-Sex Chromosome, or Common Requirements?

inferredcites →https://doi.org/10.1093/molbev/msv037openalex-snapshot

Tree of Life Reveals Clock-Like Speciation and Diversification

inferredcites →https://doi.org/10.1093/molbev/msx116openalex-snapshot

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

inferredcites →https://doi.org/10.1093/molbev/msx148openalex-snapshot

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

inferredcites →https://doi.org/10.1093/nar/gks596openalex-snapshot

Primer3—new capabilities and interfaces

inferredcites →https://doi.org/10.1093/nar/gkv1189openalex-snapshot

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

inferredcites →https://doi.org/10.1093/nar/gkv1248openalex-snapshot

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

inferredcites →https://doi.org/10.1093/nar/gkw1039openalex-snapshot

The Human Phenotype Ontology in 2017

inferredcites →https://doi.org/10.1093/nar/gkw1099openalex-snapshot

UniProt: the universal protein knowledgebase

inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot

Circos: An information aesthetic for comparative genomics

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.193474.115openalex-snapshot

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1101/gr.223727.117openalex-snapshot

Convergent origination of aDrosophila-like dosage compensation mechanism in a reptile lineage

inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot

BLAT —The BLAST -Like Alignment Tool

inferredcites →https://doi.org/10.1101/gr.230433.117openalex-snapshot

Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution

inferredcites →https://doi.org/10.1101/gr.6743907openalex-snapshot

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

inferredcites →https://doi.org/10.1101/gr.7101908openalex-snapshot

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

inferredcites →https://doi.org/10.1101/gr.7337908openalex-snapshot

ALLPATHS: De novo assembly of whole-genome shotgun microreads

inferredcites →https://doi.org/10.1101/gr.8.3.195openalex-snapshot

Consed: A Graphical Tool for Sequence Finishing

inferredcites →https://doi.org/10.1104/pp.113.230144openalex-snapshot

MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

inferredcites →https://doi.org/10.1111/1755-0998.13106openalex-snapshot

EnTAP : Bringing faster and smarter functional annotation to non‐model eukaryotic transcriptomes

inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01810.xopenalex-snapshot

SEX-CHROMOSOME TURNOVERS INDUCED BY DELETERIOUS MUTATION LOAD

inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

inferredcites →https://doi.org/10.1126/science.1183670openalex-snapshot

The Genome of the Western Clawed Frog Xenopus tropicalis

inferredcites →https://doi.org/10.1126/science.1246338openalex-snapshot

Complex evolutionary trajectories of sex chromosomes across bird taxa

inferredcites →https://doi.org/10.1146/annurev-genet-110711-155454openalex-snapshot

Dosage Compensation of the Sex Chromosomes

inferredcites →https://doi.org/10.1146/annurev-genet-112414-055311openalex-snapshot

The Biology and Evolution of Mammalian Y Chromosomes

inferredcites →https://doi.org/10.1146/annurev.genet.36.042902.092433openalex-snapshot

Xist RNA and the Mechanism of X Chromosome Inactivation

inferredcites →https://doi.org/10.1186/1471-2105-13-238openalex-snapshot

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

inferredcites →https://doi.org/10.1186/1471-2105-14-128openalex-snapshot

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

inferredcites →https://doi.org/10.1186/2042-6410-5-5openalex-snapshot

Transcriptional effects of gene dose reduction

inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot

Versatile and open software for comparing large genomes

inferredcites →https://doi.org/10.1186/gb-2009-10-10-r103openalex-snapshot

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

inferredcites →https://doi.org/10.1186/gb-2010-11-4-205openalex-snapshot

Are homologies in vertebrate sex determination due to shared ancestry or to limited options?

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1186/jbiol53openalex-snapshot

Dosage compensation is less effective in birds than in mammals

inferredcites →https://doi.org/10.1371/journal.pbio.0050326openalex-snapshot

Dosage Compensation in the Mouse Balances Up-Regulation and Silencing of X-Linked Genes

inferredcites →https://doi.org/10.1371/journal.pbio.1001643openalex-snapshot

Comparative Sex Chromosome Genomics in Snakes: Differentiation, Evolutionary Strata, and Lack of Global Dosage Compensation

inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot

Sex Determination: Why So Many Ways of Doing It?

inferredcites →https://doi.org/10.1371/journal.pcbi.1005944openalex-snapshot

MUMmer4: A fast and versatile genome alignment system

inferredcites →https://doi.org/10.1371/journal.pgen.1001154openalex-snapshot

Characterising and Predicting Haploinsufficiency in the Human Genome

inferredcites →https://doi.org/10.1371/journal.pone.0046679openalex-snapshot

Improving PacBio Long Read Accuracy by Short Read Alignment

inferredcites →https://doi.org/10.1371/journal.pone.0056006openalex-snapshot

Characterization of Sex Determination and Sex Differentiation Genes in Latimeria

inferredcites →https://doi.org/10.21775/9781910190074.08openalex-snapshot

Dosage Compensation in Frogs and Toads

inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

inferredcites →https://doi.org/10.7150/jgen.8044openalex-snapshot

The Sex Chromosomes of Frogs: Variability and Tolerance Offer Clues to Genome Evolution and Function

inferredcites →https://doi.org/10.7326/0003-4819-68-6-1375_2openalex-snapshot

Sex Chromosomes and Sex-linked Genes.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.8595openalex-snapshot

Evolutionary analyses of visual opsin genes in frogs and toads: Diversity, duplication, and positive selection

inferred← citeshttps://doi.org/10.1007/13836_2018_61openalex-snapshot

Advancing Understanding of Amphibian Evolution, Ecology, Behavior, and Conservation with Massively Parallel Sequencing

inferred← citeshttps://doi.org/10.1016/j.cbd.2020.100759openalex-snapshot

The rise and fall of globins in the amphibia

inferred← citeshttps://doi.org/10.1038/s41467-023-43012-9openalex-snapshot

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

inferred← citeshttps://doi.org/10.1038/s41598-020-57961-4openalex-snapshot

The Rhinella arenarum transcriptome: de novo assembly, annotation and gene prediction

inferred← citeshttps://doi.org/10.1093/gbe/evae246openalex-snapshot

Repeat-Rich Regions Cause False-Positive Detection of NUMTs: A Case Study in Amphibians Using an Improved Cane Toad Reference Genome

inferred← citeshttps://doi.org/10.1098/rstb.2020.0426openalex-snapshot

A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘ sexomics ’

inferred← citeshttps://doi.org/10.1101/2021.08.27.457945openalex-snapshot

Evolutionary analyses of visual opsin genes in anurans reveals diversity and positive selection suggestive of functional adaptation to distinct light environments

inferred← citeshttps://doi.org/10.1101/2021.10.18.464293openalex-snapshot

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

inferred← citeshttps://doi.org/10.1101/2022.11.10.515783openalex-snapshot

Molecular evolution of non-visual opsin genes across environmental, developmental, and morphological adaptations in frogs

inferred← citeshttps://doi.org/10.1111/1755-0998.13273openalex-snapshot

High‐quality chromosome‐level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes

inferred← citeshttps://doi.org/10.1111/1755-0998.13319openalex-snapshot

A large genome with chromosome‐scale assembly sheds light on the evolutionary success of a true toad (Bufo gargarizans)

inferred← citeshttps://doi.org/10.1111/jeb.14027openalex-snapshot

Sequencing of laser captured Z and W chromosomes of the tocantins paradoxical frog (Pseudis tocantins) provides insights on repeatome and chromosomal homology

inferred← citeshttps://doi.org/10.1111/mec.16551openalex-snapshot

Identification of ancestral sex chromosomes in the frog Glandirana rugosa bearing XX‐XY and ZZ‐ZW sex‐determining systems

inferred← citeshttps://doi.org/10.1111/mec.16936openalex-snapshot

Vertebrate genomics and adaptation – Status and prospects in Africa

inferred← citeshttps://doi.org/10.1371/journal.ppat.1009254openalex-snapshot

Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease

inferred← citeshttps://doi.org/10.1534/g3.119.400705openalex-snapshot

Genome ofSpea multiplicata, a Rapidly Developing, Phenotypically Plastic, and Desert-Adapted Spadefoot Toad

inferred← citeshttps://doi.org/10.26508/lsa.202000905openalex-snapshot

Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency

inferred← citeshttps://doi.org/10.3389/fgene.2019.01364openalex-snapshot

The Origin and Evolution of Chromosomal Reciprocal Translocation in Quasipaa boulengeri (Anura, Dicroglossidae)

inferred← citeshttps://doi.org/10.3390/ani14192782openalex-snapshot

A Snapshot of the Global Trade of South African Native Vertebrate Species Not Listed on CITES

inferred← citeshttps://doi.org/10.3390/biom16020281openalex-snapshot

Shared Origin of Y and Z Chromosomes in the Turnover of XY and ZW Systems in the Frog Glandirana rugosa

inferred← citeshttps://doi.org/10.3390/ijms231911146openalex-snapshot

Heterogeneous Evolution of Sex Chromosomes in the Torrent Frog Genus Amolops

inferred← citeshttps://doi.org/10.46471/gigabyte.2openalex-snapshot

A draft genome assembly of the eastern banjo frog Limnodynastes dumerilii dumerilii (Anura: Limnodynastidae)

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