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Conservation and Divergence in the Asexual Sporulation Gene Regulatory Network Across a Genus of Filamentous Fungi

https://doi.org/10.1101/331868
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The developmentally regulated Aspergillus nidulans wA gene encodes a polypeptide homologous to polyketide and fatty acid synthases
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Isolation and physical characterization of three essential conidiation genes from Aspergillus nidulans
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ThePenicillium chrysogenum andAspergillus nidulans wetA developmental regulatory genes are functionally equivalent
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WetA and VosA are distinct regulators of conidiation capacity, conidial quality, and biological control potential of a fungal insect pathogen
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Conidium differentiation in Aspergillus nidulans wild-type and wet-white (wetA) mutant strains
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brlA is necessary and sufficient to direct conidiophore development in aspergillus nidulans
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Interactions of three sequentially expressed genes control temporal and spatial specificity in aspergillus development
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The pleiotropic UGA35(DURL) regulatory gene of Saccharomyces cerevisiae: cloning, sequence and identity with the DAL81 gene
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Proteomic analyses reveal the key roles of BrlA and AbaA in biogenesis of gliotoxin in Aspergillus fumigatus
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Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi
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Genetic analysis of conidiation regulatory pathways in koji-mold Aspergillus oryzae
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Genetic control of asexual sporulation in filamentous fungi
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PdbrlA, PdabaA and PdwetA control distinct stages of conidiogenesis in Penicillium digitatum
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Meiotic and Mitotic Recombination in Aspergillus and Its Chromosomal Aberrations
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Design and analysis of ChIP-seq experiments for DNA-binding proteins
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Velvet-mediated repression of β-glucan synthesis in Aspergillus nidulans spores
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MEME-ChIP: motif analysis of large DNA datasets
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Trimmomatic: a flexible trimmer for Illumina sequence data
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HTSeq—a Python framework to work with high-throughput sequencing data
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Identification of Aspergillus brlA response elements (BREs) by genetic selection in yeast.
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Suppressor Mutations Bypass the Requirement of fluG for Asexual Sporulation and Sterigmatocystin Production in Aspergillus nidulans
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A MUTATIONAL ANALYSIS OF CONIDIAL DEVELOPMENT IN ASPERGILLUS NIDULANS
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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WoLF PSORT: protein localization predictor
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PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium
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FungiDB: an integrated functional genomics database for fungi
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A Quantitative Survey of Conidiation Mutants in Aspergillus nidulans
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AbaA and WetA govern distinct stages of Aspergillus fumigatus development
inferredcites →https://doi.org/10.1101/gr.136184.111openalex-snapshot
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
inferredcites →https://doi.org/10.1101/gr.772403openalex-snapshot
PANTHER: A Library of Protein Families and Subfamilies Indexed by Function
inferredcites →https://doi.org/10.1105/tpc.2.8.731openalex-snapshot
abaA Controls Phialide Differentiation in Aspergillus nidulans
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Translational Triggering and Feedback Fixation in the Control of Fungal Development.
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Regulators of G‐protein signalling in Aspergillus nidulans: RgsA downregulates stress response and stimulates asexual sporulation through attenuation of GanB (Gα) signalling
inferredcites →https://doi.org/10.1126/science.8342024openalex-snapshot
Ixr1, a Yeast Protein That Binds to Platinated DNA and Confers Sensitivity to Cisplatin
inferredcites →https://doi.org/10.1128/9781555816636.ch36openalex-snapshot
The Conidium
inferredcites →https://doi.org/10.1128/ec.00189-10openalex-snapshot
Suppressor Mutagenesis Identifies a Velvet Complex Remediator of Aspergillus nidulans Secondary Metabolism
inferredcites →https://doi.org/10.1128/ec.00220-13openalex-snapshot
WetA Is Required for Conidiogenesis and Conidium Maturation in the Ascomycete Fungus Fusarium graminearum
inferredcites →https://doi.org/10.1128/iai.01726-14openalex-snapshot
Surface Structure Characterization of Aspergillus fumigatus Conidia Mutated in the Melanin Synthesis Pathway and Their Human Cellular Immune Response
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A Developmentally Regulated Gene Cluster Involved in Conidial Pigment Biosynthesis in Aspergillus fumigatus
inferredcites →https://doi.org/10.1128/mcb.10.9.4912openalex-snapshot
Upstream Elements Repress Premature Expression of an Aspergillus Developmental Regulatory Gene
inferredcites →https://doi.org/10.1128/mcb.11.1.55openalex-snapshot
Aspergillus nidulans wetA Activates Spore-Specific Gene Expression
inferredcites →https://doi.org/10.1128/mcb.14.4.2503openalex-snapshot
The Aspergillus nidulans abaA gene encodes a transcriptional activator that acts as a genetic switch to control development.
inferredcites →https://doi.org/10.1128/mcb.7.8.2708openalex-snapshot
LEU3 of Saccharomyces cerevisiae encodes a factor for control of RNA levels of a group of leucine-specific genes.
inferredcites →https://doi.org/10.1128/mcb.7.9.3113openalex-snapshot
Isolation and physical characterization of three essential conidiation genes from Aspergillus nidulans.
inferredcites →https://doi.org/10.1128/mmbr.66.3.447-459.2002openalex-snapshot
Relationship between Secondary Metabolism and Fungal Development
inferredcites →https://doi.org/10.1139/m94-164openalex-snapshot
Cellular effects of misscheduled brlA, abaA, and wetA expression in Aspergillus nidulans
inferredcites →https://doi.org/10.1146/annurev.ge.24.120190.000253openalex-snapshot
MOLECULAR GENETICS OF ASPERGILLUS DEVELOPMENT
inferredcites →https://doi.org/10.1146/annurev.phyto.43.040204.140214openalex-snapshot
Regulation of Secondary Metabolism in Filamentous Fungi
inferredcites →https://doi.org/10.1186/1471-2105-10-202openalex-snapshot
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
inferredcites →https://doi.org/10.1186/1471-2180-13-91openalex-snapshot
Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
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Model-based Analysis of ChIP-Seq (MACS)
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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-017-1151-0openalex-snapshot
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
inferredcites →https://doi.org/10.1371/journal.pbio.1001750openalex-snapshot
The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB
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Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species
inferredcites →https://doi.org/10.1371/journal.pgen.1000046openalex-snapshot
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
inferredcites →https://doi.org/10.1371/journal.pgen.1001226openalex-snapshot
LaeA Control of Velvet Family Regulatory Proteins for Light-Dependent Development and Fungal Cell-Type Specificity
inferredcites →https://doi.org/10.1371/journal.pgen.1002345openalex-snapshot
Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis
inferredcites →https://doi.org/10.1371/journal.pone.0000970openalex-snapshot
A Novel Regulator Couples Sporogenesis and Trehalose Biogenesis in Aspergillus nidulans
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1371/journal.pone.0045935openalex-snapshot
The Role, Interaction and Regulation of the Velvet Regulator VelB in Aspergillus nidulans
inferredcites →https://doi.org/10.1371/journal.pone.0179571openalex-snapshot
WetA bridges cellular and chemical development in Aspergillus flavus
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Occurrence, Toxicity, and Analysis of Major Mycotoxins in Food
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Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
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