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Exploiting Index Cross-Talk to Modify Variant Calls

https://doi.org/10.1101/332346
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/3-540-48405-1openalex-snapshot
Advances in Cryptology — CRYPTO’ 99
inferredcites →https://doi.org/10.1007/3-540-48405-1_25openalex-snapshot
Differential Power Analysis
inferredcites →https://doi.org/10.1007/3-540-68697-5openalex-snapshot
Advances in Cryptology — CRYPTO ’96
inferredcites →https://doi.org/10.1007/3-540-68697-5_9openalex-snapshot
Timing Attacks on Implementations of Diffie-Hellman, RSA, DSS, and Other Systems
inferredcites →https://doi.org/10.1007/3-540-69053-0openalex-snapshot
Advances in Cryptology — EUROCRYPT ’97
inferredcites →https://doi.org/10.1007/3-540-69053-0_4openalex-snapshot
On the Importance of Checking Cryptographic Protocols for Faults
inferredcites →https://doi.org/10.1038/nmeth.1184openalex-snapshot
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
inferredcites →https://doi.org/10.1038/nmeth.4666openalex-snapshot
Computational correction of index switching in multiplexed sequencing libraries
inferredcites →https://doi.org/10.1038/s41467-018-05083-xopenalex-snapshot
Detection and removal of barcode swapping in single-cell RNA-seq data
inferredcites →https://doi.org/10.1038/s41598-018-23563-4openalex-snapshot
Sample-Index Misassignment Impacts Tumour Exome Sequencing
inferredcites →https://doi.org/10.1093/nar/gkm566openalex-snapshot
Targeted high-throughput sequencing of tagged nucleic acid samples
inferredcites →https://doi.org/10.1093/nar/gkr771openalex-snapshot
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
inferredcites →https://doi.org/10.1101/125724openalex-snapshot
Index switching causes “spreading-of-signal” among multiplexed samples in Illumina HiSeq 4000 DNA sequencing
inferredcites →https://doi.org/10.1101/179028openalex-snapshot
Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies
inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
inferredcites →https://doi.org/10.1109/isca.2014.6853210openalex-snapshot
Flipping bits in memory without accessing them: An experimental study of DRAM disturbance errors
inferredcites →https://doi.org/10.1111/1755-0998.12713openalex-snapshot
A novel post hoc method for detecting index switching finds no evidence for increased switching on the Illumina HiSeq X
inferredcites →https://doi.org/10.1145/2678373.2665726openalex-snapshot
Flipping bits in memory without accessing them
inferredcites →https://doi.org/10.1186/s12864-016-3217-xopenalex-snapshot
Quality filtering of Illumina index reads mitigates sample cross-talk
inferredcites →https://doi.org/10.1186/s12864-017-4428-5openalex-snapshot
Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing
inferredcites →https://doi.org/10.1186/s12864-018-4703-0openalex-snapshot
Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
inferredcites →https://doi.org/10.1371/journal.pone.0042543openalex-snapshot
Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels
inferredcites →https://doi.org/10.1371/journal.pone.0120520openalex-snapshot
Strategies for Achieving High Sequencing Accuracy for Low Diversity Samples and Avoiding Sample Bleeding Using Illumina Platform
inferredcites →https://doi.org/10.1371/journal.pone.0131080openalex-snapshot
Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-658-35442-8_34openalex-snapshot
Cyberbiokriminalität und Cyberbiosicherheit – Kriminologische Überlegungen im Angesicht von biotechnologischen Entwicklungen
inferred← citeshttps://doi.org/10.1007/978-3-658-35450-3_34-1openalex-snapshot
Cyberbiokriminalität und Cyberbiosicherheit – Kriminologische Überlegungen im Angesicht von biotechnologischen Entwicklungen
inferred← citeshttps://doi.org/10.3389/fbioe.2020.571672openalex-snapshot
A Systematic Review of the Criminogenic Potential of Synthetic Biology and Routes to Future Crime Prevention
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