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Deconvoluting Virome-Wide Antiviral Antibody Profiling Data

https://doi.org/10.1101/333625
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1001/jama.298.12.1420openalex-snapshot
Omega-3 Polyunsaturated Fatty Acid Intake and Islet Autoimmunity in Children at Increased Risk for Type 1 Diabetes
inferredcites →https://doi.org/10.1002/0471140864.ps2701s72openalex-snapshot
Overview of Protein Microarrays
inferredcites →https://doi.org/10.1007/s001250050514openalex-snapshot
Newborn screening for HLA markers associated with IDDM: Diabetes Autoimmunity Study in the Young (DAISY)
inferredcites →https://doi.org/10.1007/s11882-009-0055-9openalex-snapshot
Allergen databases: Current status and perspectives
inferredcites →https://doi.org/10.1016/j.jaut.2013.01.013openalex-snapshot
PhIP-Seq characterization of autoantibodies from patients with multiple sclerosis, type 1 diabetes and rheumatoid arthritis
inferredcites →https://doi.org/10.1016/j.tim.2013.07.001openalex-snapshot
The human virome: new tools and concepts
inferredcites →https://doi.org/10.1016/j.trsl.2012.03.006openalex-snapshot
Emerging view of the human virome
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0140-6736(10)61380-3openalex-snapshot
Role of viral respiratory infections in asthma and asthma exacerbations
inferredcites →https://doi.org/10.1038/nbt.1856openalex-snapshot
Autoantigen discovery with a synthetic human peptidome
inferredcites →https://doi.org/10.1038/ni.2614openalex-snapshot
Resident viruses and their interactions with the immune system
inferredcites →https://doi.org/10.1038/nrmicro2541openalex-snapshot
Genome–virome interactions: examining the role of common viral infections in complex disease
inferredcites →https://doi.org/10.1039/c0cs00029aopenalex-snapshot
Studying protein–protein interactions using peptide arrays
inferredcites →https://doi.org/10.1073/pnas.1607931113openalex-snapshot
Human antibody responses after dengue virus infection are highly cross-reactive to Zika virus
inferredcites →https://doi.org/10.1073/pnas.1615990113openalex-snapshot
Systematic autoantigen analysis identifies a distinct subtype of scleroderma with coincident cancer
inferredcites →https://doi.org/10.1084/jem.20101352openalex-snapshot
Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection
inferredcites →https://doi.org/10.1086/509330openalex-snapshot
Beyond Viruses: Clinical Profiles and Etiologies Associated with Encephalitis
inferredcites →https://doi.org/10.1093/nar/gku1207openalex-snapshot
NCBI Viral Genomes Resource
inferredcites →https://doi.org/10.1097/wco.0000000000000087openalex-snapshot
Autoimmune encephalitis as differential diagnosis of infectious encephalitis
inferredcites →https://doi.org/10.1101/285916openalex-snapshot
Improved Analysis of Phage ImmunoPrecipitation Sequencing (PhIP-Seq) Data Using a Z-score Algorithm
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.aaa0698openalex-snapshot
Comprehensive serological profiling of human populations using a synthetic human virome
inferredcites →https://doi.org/10.1126/scitranslmed.aaf1059openalex-snapshot
Amyloid-β peptide protects against microbial infection in mouse and worm models of Alzheimer’s disease
inferredcites →https://doi.org/10.1128/cmr.16.1.1-17.2003openalex-snapshot
Human Papillomavirus and Cervical Cancer
inferredcites →https://doi.org/10.1128/jcm.00342-07openalex-snapshot
Discrimination of Antibody to Herpes B Virus from Antibody to Herpes Simplex Virus Types 1 and 2 in Human and Macaque Sera
inferredcites →https://doi.org/10.1186/1741-7007-4-41openalex-snapshot
Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST
inferredcites →https://doi.org/10.1186/gb-2001-2-2-research0004openalex-snapshot
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
inferredcites →https://doi.org/10.2337/db07-1023openalex-snapshot
Viral Trigger for Type 1 Diabetes
inferredcites →https://doi.org/10.3390/v8030066openalex-snapshot
Linking Virus Genomes with Host Taxonomy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ana.25588openalex-snapshot
Chronic Dengue Virus Panencephalitis in a Patient with Progressive Dementia with Extrapyramidal Features
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.03.097openalex-snapshot
Comprehensive Profiling of HIV Antibody Evolution
inferred← citeshttps://doi.org/10.1016/j.ebiom.2021.103506openalex-snapshot
Citrullination of a phage-displayed human peptidome library reveals the fine specificities of rheumatoid arthritis-associated autoantibodies
inferred← citeshttps://doi.org/10.1038/s41467-020-20622-1openalex-snapshot
Profiling serum antibodies with a pan allergen phage library identifies key wheat allergy epitopes
inferred← citeshttps://doi.org/10.1101/2021.03.25.436790openalex-snapshot
Antiviral Antibody Epitope Selection is a Heritable Trait
inferred← citeshttps://doi.org/10.1101/2021.10.01.462481openalex-snapshot
Prevalence, persistence, and genetics of antibody responses to protein toxins and virulence factors
inferred← citeshttps://doi.org/10.1172/jci146927openalex-snapshot
Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality
inferred← citeshttps://doi.org/10.3389/fimmu.2023.1142634openalex-snapshot
Primary oxidative phosphorylation defects lead to perturbations in the human B cell repertoire
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