On the public citation graph

Transcriptome-wide analysis of auxin-induced carotenoid accumulation in Chlorella microalgae

https://doi.org/10.1101/334102
0 signed · 94 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/biof.5520100203openalex-snapshot
Biological functions of carotenoids ‐ diversity and evolution
inferredcites →https://doi.org/10.1002/btpr.575openalex-snapshot
Microalgae as sources of high added‐value compounds—a brief review of recent work
inferredcites →https://doi.org/10.1002/jsfa.6023openalex-snapshot
Benefits of using algae as natural sources of functional ingredients
inferredcites →https://doi.org/10.1006/jmbi.2000.4315openalex-snapshot
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
inferredcites →https://doi.org/10.1007/978-94-007-7494-0_11openalex-snapshot
Commercial Products from Algae
inferredcites →https://doi.org/10.1007/bf00196251openalex-snapshot
Studies on the evolution of auxin carriers and phytotropin receptors: Transmembrane auxin transport in unicellular and multicellular Chlorophyta
inferredcites →https://doi.org/10.1007/s00299-009-0775-2openalex-snapshot
Auxin-binding proteins without KDEL sequence in the moss Funaria hygrometrica
inferredcites →https://doi.org/10.1007/s00299-017-2126-zopenalex-snapshot
The Arabidopsis ORANGE (AtOR) gene promotes carotenoid accumulation in transgenic corn hybrids derived from parental lines with limited carotenoid pools
inferredcites →https://doi.org/10.1007/s00425-010-1153-6openalex-snapshot
Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis
inferredcites →https://doi.org/10.1007/s10142-015-0437-0openalex-snapshot
Genome-wide identification of auxin response factor (ARF) genes and its tissue-specific prominent expression in Gossypium raimondii
inferredcites →https://doi.org/10.1007/s10725-013-9867-7openalex-snapshot
The effect of natural and synthetic auxins on the growth, metabolite content and antioxidant response of green alga Chlorella vulgaris (Trebouxiophyceae)
inferredcites →https://doi.org/10.1007/s11103-017-0595-7openalex-snapshot
The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice
inferredcites →https://doi.org/10.1016/0269-7491(88)90262-xopenalex-snapshot
Auxin induced stress tolerance in algae
inferredcites →https://doi.org/10.1016/j.abb.2008.10.029openalex-snapshot
Metabolic engineering of ketocarotenoid biosynthesis in higher plants
inferredcites →https://doi.org/10.1016/j.bbrc.2008.07.128openalex-snapshot
Overexpression of Arabidopsis ZEP enhances tolerance to osmotic stress
inferredcites →https://doi.org/10.1016/j.biortech.2017.11.094openalex-snapshot
Gene expression profiling of astaxanthin and fatty acid pathways in Haematococcus pluvialis in response to different LED lighting conditions
inferredcites →https://doi.org/10.1016/j.foodchem.2014.05.107openalex-snapshot
Profiling of carotenoids and antioxidant capacity of microalgae from subtropical coastal and brackish waters
inferredcites →https://doi.org/10.1016/j.jplph.2013.08.005openalex-snapshot
Responses of cyclic phosphorylation of MAPK-like proteins in intertidal macroalgae after environmental stress
inferredcites →https://doi.org/10.1016/j.margen.2013.12.004openalex-snapshot
RNA-Seq analysis of the toxicant-induced transcriptome of the marine diatom, Ceratoneis closterium
inferredcites →https://doi.org/10.1016/j.pbi.2014.06.006openalex-snapshot
Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway
inferredcites →https://doi.org/10.1016/j.plaphy.2012.06.010openalex-snapshot
Violaxanthin de-epoxidase is rate-limiting for non-photochemical quenching under subsaturating light or during chilling in Arabidopsis
inferredcites →https://doi.org/10.1016/j.plaphy.2014.03.005openalex-snapshot
Effect of light on growth and endogenous hormones in Chlorella minutissima (Trebouxiophyceae)
inferredcites →https://doi.org/10.1016/j.ygeno.2012.06.004openalex-snapshot
Expression profiling of ABA pathway transcripts indicates crosstalk between abiotic and biotic stress responses in Arabidopsis
inferredcites →https://doi.org/10.1016/s0021-9673(97)01051-0openalex-snapshot
Determination of indole-3-pyruvic acid levels in Arabidopsis thaliana by gas chromatography–selected ion monitoring-mass spectrometry
inferredcites →https://doi.org/10.1023/a:1005862809711openalex-snapshot
Abscisic acid-dependent algal morphogenesis in the unicellular green alga Haematococcus pluvialis
inferredcites →https://doi.org/10.1023/a:1008199409953openalex-snapshot
Indole-3-acetic acid in the culture medium of two axenic green microalgae
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nbt.3519openalex-snapshot
Near-optimal probabilistic RNA-seq quantification
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/nrm3064openalex-snapshot
Asymmetric cell division in land plants and algae: the driving force for differentiation
inferredcites →https://doi.org/10.1038/srep33563openalex-snapshot
Orange protein has a role in phytoene synthase stabilization in sweetpotato
inferredcites →https://doi.org/10.1074/jbc.m110.105981openalex-snapshot
Identification of an ABCB/P-glycoprotein-specific Inhibitor of Auxin Transport by Chemical Genomics
inferredcites →https://doi.org/10.1074/jbc.m111955200openalex-snapshot
Characterization of a Family of IAA-Amino Acid Conjugate Hydrolases from Arabidopsis
inferredcites →https://doi.org/10.1093/aob/mcw194openalex-snapshot
Control of cytokinin and auxin homeostasis in cyanobacteria and algae
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/jxb/erl150openalex-snapshot
ABP1 expression regulated by IAA and ABA is associated with the cambium periodicity in Eucommia ulmoides Oliv.
inferredcites →https://doi.org/10.1093/jxb/err033openalex-snapshot
AUXIN-BINDING-PROTEIN1, the second auxin receptor: what is the significance of a two-receptor concept in plant signal transduction?
inferredcites →https://doi.org/10.1093/jxb/ers106openalex-snapshot
Polar auxin transport: an early invention
inferredcites →https://doi.org/10.1093/mp/ssr007openalex-snapshot
Auxin–Cytokinin Interaction Regulates Meristem Development
inferredcites →https://doi.org/10.1093/mp/ssr104openalex-snapshot
Auxin Biosynthesis: A Simple Two-Step Pathway Converts Tryptophan to Indole-3-Acetic Acid in Plants
inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot
UniProt: the Universal Protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkm160openalex-snapshot
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/nar/gkq224openalex-snapshot
Biases in Illumina transcriptome sequencing caused by random hexamer priming
inferredcites →https://doi.org/10.1093/nar/gkr1060openalex-snapshot
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
inferredcites →https://doi.org/10.1093/nar/gkr367openalex-snapshot
HMMER web server: interactive sequence similarity searching
inferredcites →https://doi.org/10.1093/nar/gkt1223openalex-snapshot
Pfam: the protein families database
inferredcites →https://doi.org/10.1093/nar/gkw982openalex-snapshot
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
inferredcites →https://doi.org/10.1093/pcp/pcs149openalex-snapshot
Arabidopsis ABCB21 is a Facultative Auxin Importer/Exporter Regulated by Cytoplasmic Auxin Concentration
inferredcites →https://doi.org/10.1093/pcp/pcw054openalex-snapshot
Abscisic Acid Participates in the Control of Cell Cycle Initiation Through Heme Homeostasis in the Unicellular Red AlgaCyanidioschyzon merolae
inferredcites →https://doi.org/10.1101/gr.196469.115openalex-snapshot
TransRate: reference-free quality assessment of de novo transcriptome assemblies
inferredcites →https://doi.org/10.1104/pp.111.187559openalex-snapshot
Bipartite Promoter Element Required for Auxin Response
inferredcites →https://doi.org/10.1104/pp.124.3.1437openalex-snapshot
Auxin-Induced Ethylene Triggers Abscisic Acid Biosynthesis and Growth Inhibition
inferredcites →https://doi.org/10.1104/pp.17.00274openalex-snapshot
Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens
inferredcites →https://doi.org/10.1105/tpc.017046openalex-snapshot
IBR5, a Dual-Specificity Phosphatase-Like Protein Modulating Auxin and Abscisic Acid Responsiveness in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.106.046417openalex-snapshot
The CauliflowerOrGene Encodes a DnaJ Cysteine-Rich Domain-Containing Protein That Mediates High Levels of β-Carotene Accumulation
inferredcites →https://doi.org/10.1105/tpc.110.078972openalex-snapshot
The Arabidopsis Cell Cycle F-Box Protein SKP2A Binds to Auxin
inferredcites →https://doi.org/10.1105/tpc.111.087064openalex-snapshot
AUXIN BINDING PROTEIN1: The Outsider
inferredcites →https://doi.org/10.1105/tpc.114.127993openalex-snapshot
TAA1-Regulated Local Auxin Biosynthesis in the Root-Apex Transition Zone Mediates the Aluminum-Induced Inhibition of Root Growth in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03378.xopenalex-snapshot
SKP2A, an F‐box protein that regulates cell division, is degraded via the ubiquitin pathway
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04610.xopenalex-snapshot
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type‐A response regulator of cytokinin signaling
inferredcites →https://doi.org/10.1111/j.1467-7652.2010.00554.xopenalex-snapshot
Synergistic metabolism in hybrid corn indicates bottlenecks in the carotenoid pathway and leads to the accumulation of extraordinary levels of the nutritionally important carotenoid zeaxanthin
inferredcites →https://doi.org/10.1111/j.1529-8817.1965.tb04552.xopenalex-snapshot
Trichosarcina polymorpha Gen. et Sp. Nov.
inferredcites →https://doi.org/10.1111/jpy.12061openalex-snapshot
Auxin and cytokinin relationships in 24 microalgal strains 1
inferredcites →https://doi.org/10.1134/s1021443707020021openalex-snapshot
Phytohormones in algae
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134148openalex-snapshot
Mechanism of Auxin-Regulated Gene Expression in Plants
inferredcites →https://doi.org/10.1179/174329211x13020951739938openalex-snapshot
Xanthophyll cycle – a mechanism protecting plants against oxidative stress
inferredcites →https://doi.org/10.1186/1471-2105-13-134openalex-snapshot
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
inferredcites →https://doi.org/10.1186/1471-2148-9-126openalex-snapshot
The evolution of nuclear auxin signalling
inferredcites →https://doi.org/10.1186/1471-2164-15-s12-s4openalex-snapshot
Computational analysis of auxin responsive elements in the Arabidopsis thaliana L. genome
inferredcites →https://doi.org/10.1186/1471-2164-15-s5-s4openalex-snapshot
Next-generation sequencing reveals large connected networks of intra-host HCV variants
inferredcites →https://doi.org/10.1186/1471-2229-8-41openalex-snapshot
The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation
inferredcites →https://doi.org/10.1186/s12864-016-2526-4openalex-snapshot
Genome-wide identification and evolutionary analyses of the PP2C gene family with their expression profiling in response to multiple stresses in Brachypodium distachyon
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s40529-016-0159-1openalex-snapshot
Multiple regulatory roles of AP2/ERF transcription factor in angiosperm
inferredcites →https://doi.org/10.1199/tab.0166openalex-snapshot
Abscisic Acid Synthesis and Response
inferredcites →https://doi.org/10.12688/f1000research.7492.1openalex-snapshot
Up in the air: Untethered Factors of Auxin Response
inferredcites →https://doi.org/10.1371/journal.pgen.1006607openalex-snapshot
The Arabidopsis bZIP11 transcription factor links low-energy signalling to auxin-mediated control of primary root growth
inferredcites →https://doi.org/10.1371/journal.pone.0040751openalex-snapshot
Isolation and Evaluation of Oil-Producing Microalgae from Subtropical Coastal and Brackish Waters
inferredcites →https://doi.org/10.1371/journal.pone.0205227openalex-snapshot
Molecular machinery of auxin synthesis, secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230
inferredcites →https://doi.org/10.3389/fgene.2014.00013openalex-snapshot
On the optimal trimming of high-throughput mRNA sequence data
inferredcites →https://doi.org/10.3389/fpls.2013.00163openalex-snapshot
Regulation of cell division and expansion by sugar and auxin signaling
inferredcites →https://doi.org/10.3389/fpls.2016.00187openalex-snapshot
Global Plant Stress Signaling: Reactive Oxygen Species at the Cross-Road
inferredcites →https://doi.org/10.3390/en5061835openalex-snapshot
Microalgae Isolation and Selection for Prospective Biodiesel Production
inferredcites →https://doi.org/10.3945/ajcn.112.034819openalex-snapshot
β-Carotene and other carotenoids in protection from sunlight
inferredcites →https://doi.org/10.4161/psb.2.4.3897openalex-snapshot
The E2FC-DPB Transcription Factor Controls Cell Division, Endoreplication and Lateral Root Formation in a SCFSKP2A- Dependent Manner
inferredcites →https://doi.org/10.4161/psb.22990openalex-snapshot
The function of ABCB transporters in auxin transport
inferredcites →https://doi.org/10.4161/psb.27700openalex-snapshot
WRKY transcription factors
inferredcites →https://doi.org/10.4161/psb.6.11.17933openalex-snapshot
Two Arabidopsis guard cell-preferential MAPK genes,MPK9andMPK12, function in biotic stress response
inferredcites →https://doi.org/10.4161/psb.6.2.14701openalex-snapshot
Mitogen-activated protein kinase signaling in plants under abiotic stress
inferredcites →https://doi.org/10.5772/50311openalex-snapshot
Protein Synthesis and the Stress Response

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/aocs.12443openalex-snapshot
Effects of Foliar Applications of Zinc in the Forms of Free Mineral or Amino Acid Complexed on Qualitative Characteristics of Olive Oil
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.