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Captivity and exposure to the emerging fungal pathogen Batrachochytrium salamandrivorans are linked to perturbation and dysbiosis of the amphibian skin microbiome

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00248-015-0653-0openalex-snapshot

Microbiome Variation Across Amphibian Skin Regions: Implications for Chytridiomycosis Mitigation Efforts

inferredcites →https://doi.org/10.1007/s00248-016-0797-6openalex-snapshot

Composition of the Cutaneous Bacterial Community in Japanese Amphibians: Effects of Captivity, Host Species, and Body Region

inferredcites →https://doi.org/10.1007/s00248-016-0916-4openalex-snapshot

Greater Species Richness of Bacterial Skin Symbionts Better Suppresses the Amphibian Fungal Pathogen Batrachochytrium Dendrobatidis

inferredcites →https://doi.org/10.1007/s00248-017-1095-7openalex-snapshot

Prodigiosin, Violacein, and Volatile Organic Compounds Produced by Widespread Cutaneous Bacteria of Amphibians Can Inhibit Two Batrachochytrium Fungal Pathogens

inferredcites →https://doi.org/10.1007/s10886-007-9352-8openalex-snapshot

The Identification of 2,4-diacetylphloroglucinol as an Antifungal Metabolite Produced by Cutaneous Bacteria of the Salamander Plethodon cinereus

inferredcites →https://doi.org/10.1016/j.biocon.2004.05.022openalex-snapshot

Evaluation of translocation as a tool for mitigating development threats to great crested newts (Triturus cristatus) in England, 1990–2001

inferredcites →https://doi.org/10.1016/j.biocon.2014.05.029openalex-snapshot

The effect of captivity on the cutaneous bacterial community of the critically endangered Panamanian golden frog (Atelopus zeteki)

inferredcites →https://doi.org/10.1038/ismej.2009.27openalex-snapshot

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

inferredcites →https://doi.org/10.1038/ismej.2013.200openalex-snapshot

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

inferredcites →https://doi.org/10.1038/nature23292openalex-snapshot

The evolution of the host microbiome as an ecosystem on a leash

inferredcites →https://doi.org/10.1038/ncomms14742openalex-snapshot

Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi

inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

inferredcites →https://doi.org/10.1038/nmicrobiol.2017.121openalex-snapshot

Stress and stability: applying the Anna Karenina principle to animal microbiomes

inferredcites →https://doi.org/10.1038/nri3535openalex-snapshot

Microbiota-mediated colonization resistance against intestinal pathogens

inferredcites →https://doi.org/10.1038/s41467-018-02967-wopenalex-snapshot

Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure

inferredcites →https://doi.org/10.1038/srep08037openalex-snapshot

Treatment of urodelans based on temperature dependent infection dynamics of Batrachochytrium salamandrivorans

inferredcites →https://doi.org/10.1038/srep11788openalex-snapshot

Successful treatment of Batrachochytrium salamandrivorans infections in salamanders requires synergy between voriconazole, polymyxin E and temperature

inferredcites →https://doi.org/10.1046/j.1442-9993.2001.01070.xopenalex-snapshot

A new method for non-parametric multivariate analysis of variance

inferredcites →https://doi.org/10.1073/pnas.95.15.9031openalex-snapshot

Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America

inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btr381openalex-snapshot

UCHIME improves sensitivity and speed of chimera detection

inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

inferredcites →https://doi.org/10.1093/nar/gkm864openalex-snapshot

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

inferredcites →https://doi.org/10.1098/rspb.2014.2881openalex-snapshot

Composition of symbiotic bacteria predicts survival in Panamanian golden frogs infected with a lethal fungus

inferredcites →https://doi.org/10.1098/rspb.2016.1553openalex-snapshot

Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity

inferredcites →https://doi.org/10.1101/158428openalex-snapshot

Host Microbiome Richness Predicts Resistance to Disturbance by Pathogenic Infection in a Vertebrate Host

inferredcites →https://doi.org/10.1111/ele.12099openalex-snapshot

Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use

inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01376.xopenalex-snapshot

UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi

inferredcites →https://doi.org/10.1111/j.1753-4887.1981.tb06752.xopenalex-snapshot

Proceedings of the National Academy of Sciences of the United States of America

inferredcites →https://doi.org/10.1111/mec.14220openalex-snapshot

Temperature variation, bacterial diversity and fungal infection dynamics in the amphibian skin

inferredcites →https://doi.org/10.1111/mec.14456openalex-snapshot

Probiotic consortia are not uniformly effective against different amphibian chytrid pathogen isolates

inferredcites →https://doi.org/10.1126/science.1222195openalex-snapshot

Regulated Virulence Controls the Ability of a Pathogen to Compete with the Gut Microbiota

inferredcites →https://doi.org/10.1126/science.1258268openalex-snapshot

Recent introduction of a chytrid fungus endangers Western Palearctic salamanders

inferredcites →https://doi.org/10.1126/science.aab1052openalex-snapshot

Averting a North American biodiversity crisis

inferredcites →https://doi.org/10.1126/science.aar1965openalex-snapshot

Recent Asian origin of chytrid fungi causing global amphibian declines

inferredcites →https://doi.org/10.1128/aem.00010-15openalex-snapshot

Amphibian Symbiotic Bacteria Do Not Show a Universal Ability To Inhibit Growth of the Global Panzootic Lineage of Batrachochytrium dendrobatidis

inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/eissn.1098-5336openalex-snapshot

Applied and Environmental Microbiology

inferredcites →https://doi.org/10.1128/mbio.00782-16openalex-snapshot

A Commensal Bacterium Promotes Virulence of an Opportunistic Pathogen via Cross-Respiration

inferredcites →https://doi.org/10.1136/vr.h2264openalex-snapshot

Emerging disease in UK amphibians

inferredcites →https://doi.org/10.1371/journal.pone.0027310openalex-snapshot

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1643/0045-8511(2007)2007[630:ccbfte]2.0.co;2openalex-snapshot

Common Cutaneous Bacteria from the Eastern Red-Backed Salamander Can Inhibit Pathogenic Fungi

inferredcites →https://doi.org/10.2307/2963459openalex-snapshot

Species Assemblages and Indicator Species: The Need for a Flexible Asymmetrical Approach

inferredcites →https://doi.org/10.3201/eid0602.000216openalex-snapshot

Chlamydia pneumoniae Infection in a Breeding Colony of African Clawed Frogs (Xenopus tropicalis)

inferredcites →https://doi.org/10.32614/cran.package.afexopenalex-snapshot

afex: Analysis of Factorial Experiments

inferredcites →https://doi.org/10.32614/cran.package.labdsvopenalex-snapshot

labdsv: Ordination and Multivariate Analysis for Ecology

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3354/dao060141openalex-snapshot

Rapid quantitative detection of chytridiomycosis (Batrachochytrium dendrobatidis) in amphibian samples using real-time Taqman PCR assay

inferredcites →https://doi.org/10.3389/fmicb.2017.01551openalex-snapshot

Inhibition of Fungal Pathogens across Genotypes and Temperatures by Amphibian Skin Bacteria

inferredcites →https://doi.org/10.3389/fmicb.2017.02494openalex-snapshot

Fight Fungi with Fungi: Antifungal Properties of the Amphibian Mycobiome

inferredcites →https://doi.org/10.7589/0090-3558-35.1.49openalex-snapshot

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2022.12.15.520292openalex-snapshot

An improved habitat suitability index for the great crested newt

inferred← citeshttps://doi.org/10.33256/34.2.5567openalex-snapshot

An improved habitat suitability index for the great crested newt Triturus cristatus

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