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Identification of Adomavirus Virion Proteins

https://doi.org/10.1101/341131
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471143030.cb2601s37openalex-snapshot
Production of Papillomavirus‐Based Gene Transfer Vectors
inferredcites →https://doi.org/10.1002/prot.22499openalex-snapshot
Fast and accurate automatic structure prediction with HHpred
inferredcites →https://doi.org/10.1016/j.bbagrm.2009.10.006openalex-snapshot
Diversity and evolution of chromatin proteins encoded by DNA viruses
inferredcites →https://doi.org/10.1016/j.bbapap.2015.04.015openalex-snapshot
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks
inferredcites →https://doi.org/10.1016/j.cbpa.2018.09.009openalex-snapshot
‘Democratized’ genomic enzymology web tools for functional assignment
inferredcites →https://doi.org/10.1016/j.coviro.2011.12.008openalex-snapshot
Structure of human adenovirus
inferredcites →https://doi.org/10.1016/j.jmb.2017.12.007openalex-snapshot
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
inferredcites →https://doi.org/10.1016/j.virol.2003.12.027openalex-snapshot
Reactivity of human sera in a sensitive, high-throughput pseudovirus-based papillomavirus neutralization assay for HPV16 and HPV18
inferredcites →https://doi.org/10.1016/j.virol.2010.12.057openalex-snapshot
Novel DNA virus isolated from samples showing endothelial cell necrosis in the Japanese eel, Anguilla japonica
inferredcites →https://doi.org/10.1016/j.virol.2015.02.039openalex-snapshot
Origins and evolution of viruses of eukaryotes: The ultimate modularity
inferredcites →https://doi.org/10.1016/j.ymeth.2016.02.020openalex-snapshot
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
inferredcites →https://doi.org/10.1016/s0168-1702(02)00111-9openalex-snapshot
Substrate specificity of adenovirus protease
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1016/s1097-2765(02)00592-0openalex-snapshot
Structural Unity among Viral Origin Binding Proteins
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/s41467-019-11433-0openalex-snapshot
Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids
inferredcites →https://doi.org/10.1038/srep24501openalex-snapshot
The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts
inferredcites →https://doi.org/10.1073/pnas.1621061114openalex-snapshot
Multiple origins of viral capsid proteins from cellular ancestors
inferredcites →https://doi.org/10.1073/pnas.81.12.3655openalex-snapshot
Adenovirus tripartite leader sequence enhances translation of mRNAs late after infection.
inferredcites →https://doi.org/10.1080/19420889.2017.1296614openalex-snapshot
A network perspective on the virus world
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bib/bbx108openalex-snapshot
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
inferredcites →https://doi.org/10.1093/bioinformatics/btv033openalex-snapshot
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/infdis/jiu648openalex-snapshot
Raising Expectations For Subunit Vaccine
inferredcites →https://doi.org/10.1093/nar/gki702openalex-snapshot
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members
inferredcites →https://doi.org/10.1093/nar/gkn180openalex-snapshot
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
inferredcites →https://doi.org/10.1093/nar/gkt389openalex-snapshot
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity
inferredcites →https://doi.org/10.1093/nar/gkw879openalex-snapshot
The Papillomavirus Episteme: a major update to the papillomavirus sequence database
inferredcites →https://doi.org/10.1093/nar/gkx1077openalex-snapshot
The eukaryotic linear motif resource – 2018 update
inferredcites →https://doi.org/10.1099/vir.0.000033openalex-snapshot
Hamburger polyomaviruses
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1101/gr.213959.116openalex-snapshot
metaSPAdes: a new versatile metagenomic assembler
inferredcites →https://doi.org/10.1111/jfd.12423openalex-snapshot
Isolation of a novel polyomavirus, related to Japanese eel endothelial cell‐infecting virus, from marbled eels,Anguilla marmorata(Quoy & Gaimard)
inferredcites →https://doi.org/10.1111/nyas.12728openalex-snapshot
Evolution of double‐stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant viruses
inferredcites →https://doi.org/10.1128/jvi.01524-18openalex-snapshot
DNA Tumor Viruses and Their Contributions to Molecular Biology
inferredcites →https://doi.org/10.1128/jvi.02014-15openalex-snapshot
A Single Maturation Cleavage Site in Adenovirus Impacts Cell Entry and Capsid Assembly
inferredcites →https://doi.org/10.1128/jvi.02030-16openalex-snapshot
Studies on the Interaction of Tumor-Derived HD5 Alpha Defensins with Adenoviruses and Implications for Oncolytic Adenovirus Therapy
inferredcites →https://doi.org/10.1128/jvi.78.2.751-757.2004openalex-snapshot
Efficient Intracellular Assembly of Papillomaviral Vectors
inferredcites →https://doi.org/10.1128/jvi.79.5.2839-2846.2005openalex-snapshot
Maturation of Papillomavirus Capsids
inferredcites →https://doi.org/10.1128/mbio.00185-18openalex-snapshot
Microscopic and Molecular Evidence of the First Elasmobranch Adomavirus, the Cause of Skin Disease in a Giant Guitarfish, Rhynchobatus djiddensis
inferredcites →https://doi.org/10.1128/mbio.00431-16openalex-snapshot
Characterization of a Novel Orthomyxo-like Virus Causing Mass Die-Offs of Tilapia
inferredcites →https://doi.org/10.1146/annurev-micro-092611-150154openalex-snapshot
Large T Antigens of Polyomaviruses: Amazing Molecular Machines
inferredcites →https://doi.org/10.1158/0008-5472.can-17-0337openalex-snapshot
Variant Review with the Integrative Genomics Viewer
inferredcites →https://doi.org/10.1186/1745-6150-7-12openalex-snapshot
Domain enhanced lookup time accelerated BLAST
inferredcites →https://doi.org/10.1186/s12915-015-0207-4openalex-snapshot
A novel group of diverse Polinton-like viruses discovered by metagenome analysis
inferredcites →https://doi.org/10.1186/s13059-019-1841-xopenalex-snapshot
Mash Screen: high-throughput sequence containment estimation for genome discovery
inferredcites →https://doi.org/10.1292/jvms.15-0515openalex-snapshot
Detection of Japanese eel endothelial cells-infecting virus in Anguilla japonica elvers
inferredcites →https://doi.org/10.1371/journal.pcbi.1004343openalex-snapshot
Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling
inferredcites →https://doi.org/10.1371/journal.ppat.1005574openalex-snapshot
The Ancient Evolutionary History of Polyomaviruses
inferredcites →https://doi.org/10.64628/aai.63reqeyn5openalex-snapshot
Let them eat carp: Fish farms are helping to fight hunger
inferredcites →https://doi.org/10.7554/elife.51971openalex-snapshot
Discovery of several thousand highly diverse circular DNA viruses

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00239-019-09913-4openalex-snapshot
Virus–Host Coevolution with a Focus on Animal and Human DNA Viruses
inferred← citeshttps://doi.org/10.1007/s00705-019-04365-zopenalex-snapshot
Complete genome sequence and phylogenetic analysis of a novel aquareovirus isolated from a diseased marbled eel (Anguilla marmorata)
inferred← citeshttps://doi.org/10.1007/s00705-024-06019-1openalex-snapshot
Host and geography impact virus diversity in New Zealand’s longfin and shortfin eels
inferred← citeshttps://doi.org/10.1007/s00705-026-06631-3openalex-snapshot
Genome characterization and environmental DNA-based detection of a novel adenovirus from red seabream (Pagrus major)
inferred← citeshttps://doi.org/10.1016/b978-0-323-91169-6.00018-2openalex-snapshot
Classification and identification of aquatic animal viruses
inferred← citeshttps://doi.org/10.1016/b978-0-323-91169-6.00038-8openalex-snapshot
Adomaviruses of aquatic organisms
inferred← citeshttps://doi.org/10.1016/j.cub.2024.02.008openalex-snapshot
Host adaptive radiation is associated with rapid virus diversification and cross-species transmission in African cichlid fishes
inferred← citeshttps://doi.org/10.1016/j.meegid.2019.104150openalex-snapshot
Evolution and molecular epidemiology of polyomaviruses
inferred← citeshttps://doi.org/10.1016/j.virol.2023.109884openalex-snapshot
Host specificity shapes fish viromes across lakes on an isolated remote island
inferred← citeshttps://doi.org/10.1016/j.virusres.2018.11.009openalex-snapshot
Discovery of highly divergent lineages of plant-associated astro-like viruses sheds light on the emergence of potyviruses
inferred← citeshttps://doi.org/10.1101/2024.03.25.586562openalex-snapshot
Widespread Horizontal Gene Transfer Among Animal Viruses
inferred← citeshttps://doi.org/10.1111/jfd.13500openalex-snapshot
Isolation of a novel adomavirus from cultured American eels, Anguilla rostrata, with haemorrhagic gill necrosis disease
inferred← citeshttps://doi.org/10.1111/jfd.14135openalex-snapshot
Establishment of a New Endothelial Cell Line of Japanese Eel and Its Application to the Investigation of Temperature Preference of Japanese Eel Endothelial Cells‐Infecting Virus
inferred← citeshttps://doi.org/10.1128/mmbr.00061-19openalex-snapshot
Global Organization and Proposed Megataxonomy of the Virus World
inferred← citeshttps://doi.org/10.1128/mra.01479-19openalex-snapshot
Draft Genome Sequence of an Adomavirus Associated with Raised Mucoid Skin Lesions on Smallmouth Bass (Micropterus dolomieu)
inferred← citeshttps://doi.org/10.1128/spectrum.04570-22openalex-snapshot
Deciphering the Origin of DNA Viruses (Replication-Associated Parvo-NS1) That Infect Vertebrates from Invertebrate-Infecting Viruses
inferred← citeshttps://doi.org/10.3147/jsfp.59.17openalex-snapshot
Experimental Waterborne Infection of Japanese Eel Endothelial Cells-Infecting Virus (JEECV) and the Effects of Water Temperature on Infection
inferred← citeshttps://doi.org/10.3147/jsfp.60.199openalex-snapshot
Virucidal Activities of Common Disinfectants Against the Japanese Eel Endothelial Cells-Infecting Virus (JEECV)
inferred← citeshttps://doi.org/10.3354/dao03480openalex-snapshot
Hyperpigmented melanistic skin lesions of smallmouth bass Micropterus dolomieu from the Chesapeake Bay watershed
inferred← citeshttps://doi.org/10.3389/fvets.2024.1470052openalex-snapshot
Novel adomavirus associated with proliferative skin lesions affecting the dermal denticles of a sand tiger shark (Carcharias taurus)
inferred← citeshttps://doi.org/10.7554/elife.97647openalex-snapshot
Widespread Horizontal Gene Transfer Among Animal Viruses
inferred← citeshttps://doi.org/10.7554/elife.97647.1openalex-snapshot
Widespread Horizontal Gene Transfer Among Animal Viruses
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