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Developing a modern data workflow for evolving data

https://doi.org/10.1101/344804
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4615-0005-6_17openalex-snapshot
Mining and Monitoring Evolving Data
inferredcites →https://doi.org/10.1016/j.tree.2009.03.005openalex-snapshot
Adaptive monitoring: a new paradigm for long-term research and monitoring
inferredcites →https://doi.org/10.1038/498255aopenalex-snapshot
The big challenges of big data
inferredcites →https://doi.org/10.1038/micronano.2016.22openalex-snapshot
Multi-analyte biosensor interface for real-time monitoring of 3D microtissue spheroids in hanging-drop networks
inferredcites →https://doi.org/10.1038/nbt.3780openalex-snapshot
Reproducibility of computational workflows is automated using continuous analysis
inferredcites →https://doi.org/10.1038/sdata.2018.97openalex-snapshot
HormoneBase, a population-level database of steroid hormone levels across vertebrates
inferredcites →https://doi.org/10.1073/pnas.1710231115openalex-snapshot
Iterative near-term ecological forecasting: Needs, opportunities, and challenges
inferredcites →https://doi.org/10.1093/biosci/bix025openalex-snapshot
Skills and Knowledge for Data-Intensive Environmental Research
inferredcites →https://doi.org/10.1093/nar/gkv1258openalex-snapshot
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database
inferredcites →https://doi.org/10.1101/332783openalex-snapshot
The Portal Project: a long-term study of a Chihuahuan desert ecosystem
inferredcites →https://doi.org/10.1111/2041-210x.13104openalex-snapshot
Developing an automated iterative near‐term forecasting system for an ecological study
inferredcites →https://doi.org/10.1111/geb.12729openalex-snapshot
BioTIME: A database of biodiversity time series for the Anthropocene
inferredcites →https://doi.org/10.1111/j.1365-2486.2011.02451.xopenalex-snapshot
TRY – a global database of plant traits
inferredcites →https://doi.org/10.1126/science.1197962openalex-snapshot
Challenges and Opportunities of Open Data in Ecology
inferredcites →https://doi.org/10.1126/science.1203672openalex-snapshot
Early Warnings of Regime Shifts: A Whole-Ecosystem Experiment
inferredcites →https://doi.org/10.1145/319806.319816openalex-snapshot
Comparison of access methods for time-evolving data
inferredcites →https://doi.org/10.1186/1751-0473-8-7openalex-snapshot
Git can facilitate greater reproducibility and increased transparency in science
inferredcites →https://doi.org/10.1371/journal.pbio.1001195openalex-snapshot
The Open Knowledge Foundation: Open Data Means Better Science
inferredcites →https://doi.org/10.1371/journal.pbio.1001745openalex-snapshot
Best Practices for Scientific Computing
inferredcites →https://doi.org/10.1371/journal.pcbi.1004947openalex-snapshot
Ten Simple Rules for Taking Advantage of Git and GitHub
inferredcites →https://doi.org/10.1371/journal.pcbi.1005755openalex-snapshot
Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
inferredcites →https://doi.org/10.1371/journal.pntd.0001404openalex-snapshot
Toward an Open-Access Global Database for Mapping, Control, and Surveillance of Neglected Tropical Diseases
inferredcites →https://doi.org/10.15497/rda00016openalex-snapshot
Data Citation of Evolving Data: Recommendations of the RDA Working Group on Data Citation (WGDC)
inferredcites →https://doi.org/10.1890/0012-9658(2006)87[2132:tgmpca]2.0.co;2openalex-snapshot
TREE GROWTH, MORTALITY, PHYSICAL CONDITION, AND MICROSITE IN AN OLD-GROWTH LOWLAND TROPICAL RAIN FOREST
inferredcites →https://doi.org/10.1890/08-1222.1openalex-snapshot
Long‐term monitoring and experimental manipulation of a Chihuahuan Desert ecosystem near Portal, Arizona, USA
inferredcites →https://doi.org/10.1890/120103openalex-snapshot
Big data and the future of ecology
inferredcites →https://doi.org/10.1890/15-2115.1openalex-snapshot
Long‐term monitoring and experimental manipulation of a Chihuahuan desert ecosystem near Portal, Arizona (1977–2013)
inferredcites →https://doi.org/10.31219/osf.io/nsv2copenalex-snapshot
Dat - Distributed Dataset Synchronization And Versioning
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.32614/rj-2011-002openalex-snapshot
testthat: Get Started with Testing
inferredcites →https://doi.org/10.32614/rj-2011-011openalex-snapshot
Creating and Deploying an Application with (R)Excel and R
inferredcites →https://doi.org/10.4033/iee.2015.8.9.copenalex-snapshot
Some thoughts on best publishing practices for scientific software
inferredcites →https://doi.org/10.7554/elife.04333openalex-snapshot
An open investigation of the reproducibility of cancer biology research

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/gigascience/giaa140openalex-snapshot
Streamlining data-intensive biology with workflow systems
inferred← citeshttps://doi.org/10.1093/gigascience/giy129openalex-snapshot
A parasite's perspective on data sharing
inferred← citeshttps://doi.org/10.1101/332783openalex-snapshot
The Portal Project: a long-term study of a Chihuahuan desert ecosystem
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007128openalex-snapshot
Open collaborative writing with Manubot
inferred← citeshttps://doi.org/10.2218/ijdc.v17i1.839openalex-snapshot
Who Writes Scholarly Code?
inferred← citeshttps://doi.org/10.31234/osf.io/8xzqyopenalex-snapshot
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
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