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Miniscule differences between the sex chromosomes in the giant genome of a salamander, Ambystoma mexicanum

https://doi.org/10.1101/354092
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-8628(19991229)89:4<201::aid-ajmg4>3.0.co;2-uopenalex-snapshot
Syndromal (and nonsyndromal) forms of male pseudohermaphroditism
inferredcites →https://doi.org/10.1002/aja.1000760103openalex-snapshot
Sex determination in ambystomid salamanders: A study of the progeny of females experimentally converted into males
inferredcites →https://doi.org/10.1002/jez.1401090202openalex-snapshot
Reversal of sex in females of genotype WW in the axolotl (Siredon or Ambystoma mexicanum) and its bearing upon the role of the Z chromosomes in the development of the testis
inferredcites →https://doi.org/10.1002/jez.1401340303openalex-snapshot
The origin of spontaneous and experimental haploids in the Mexican axolotl (Siredon — or Ambystoma — Mexicanum)
inferredcites →https://doi.org/10.1007/978-3-0348-7781-7_8openalex-snapshot
Sex chromosomes, sex-linked genes, and sex determination in the vertebrate class Amphibia
inferredcites →https://doi.org/10.1007/bf00286329openalex-snapshot
Cytogenetics of diploid and triploid salamanders of the Ambystoma jeffersonianum complex
inferredcites →https://doi.org/10.1016/0047-2484(80)90077-9openalex-snapshot
Animal cytology and evolution
inferredcites →https://doi.org/10.1016/b978-0-12-108750-0.50010-0openalex-snapshot
SEXUAL SELECTION AND SEXUAL CONFLICT
inferredcites →https://doi.org/10.1016/b978-0-12-108750-0.x5001-0openalex-snapshot
Sexual Selection and Reproductive Competition in Insects
inferredcites →https://doi.org/10.1016/b978-0-12-297880-7.50020-2openalex-snapshot
Sex-Determining Mechanisms and Sex Chromosomes in Amphibia
inferredcites →https://doi.org/10.1016/j.celrep.2016.12.063openalex-snapshot
A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
inferredcites →https://doi.org/10.1016/j.cub.2006.08.021openalex-snapshot
Relationships between Vertebrate ZW and XY Sex Chromosome Systems
inferredcites →https://doi.org/10.1016/j.gde.2004.09.005openalex-snapshot
Sex chromosome evolution in non-mammalian vertebrates
inferredcites →https://doi.org/10.1016/j.gde.2006.10.007openalex-snapshot
A dynamic view of sex chromosome evolution
inferredcites →https://doi.org/10.1016/j.gene.2015.04.075openalex-snapshot
Alpha-thalassemia X-linked intellectual disability syndrome identified by whole exome sequencing in two boys with white matter changes and developmental retardation
inferredcites →https://doi.org/10.1016/j.stemcr.2014.06.018openalex-snapshot
CRISPR-Mediated Genomic Deletion of Sox2 in the Axolotl Shows a Requirement in Spinal Cord Neural Stem Cell Amplification during Tail Regeneration
inferredcites →https://doi.org/10.1016/j.ydbio.2016.05.027openalex-snapshot
A linkage map for the Newt Notophthalmus viridescens: Insights in vertebrate genome and chromosome evolution
inferredcites →https://doi.org/10.1016/j.ydbio.2017.06.032openalex-snapshot
Deep ancestry of programmed genome rearrangement in lampreys
inferredcites →https://doi.org/10.1016/j.yexcr.2013.02.013openalex-snapshot
A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0960-9822(02)00448-7openalex-snapshot
The evolution of chromosomal sex determination and dosage compensation
inferredcites →https://doi.org/10.1016/s1043-2760(97)00135-5openalex-snapshot
Sex-Determining Genes
inferredcites →https://doi.org/10.1038/hdy.2009.15openalex-snapshot
Amphibian sex determination: segregation and linkage analysis using members of the tiger salamander species complex (Ambystoma mexicanum and A. t. tigrinum)
inferredcites →https://doi.org/10.1038/nature13151openalex-snapshot
Origins and functional evolution of Y chromosomes across mammals
inferredcites →https://doi.org/10.1038/nature25458openalex-snapshot
The axolotl genome and the evolution of key tissue formation regulators
inferredcites →https://doi.org/10.1038/s41588-017-0036-1openalex-snapshot
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
inferredcites →https://doi.org/10.1038/s41598-017-00059-1openalex-snapshot
Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum
inferredcites →https://doi.org/10.1038/sj.hdy.6800697openalex-snapshot
Steps in the evolution of heteromorphic sex chromosomes
inferredcites →https://doi.org/10.1038/srep16413openalex-snapshot
Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing
inferredcites →https://doi.org/10.1046/j.1420-9101.1990.3010049.xopenalex-snapshot
Evolutionary changes of heterogametic sex in the phylogenetic history of amphibians
inferredcites →https://doi.org/10.1046/j.1420-9101.1993.6020300.xopenalex-snapshot
David M. Green and Stanley K. Sessions (eds.), 1991. Amphibian Cytogenetics and Evolution. Academic Press, pp. 456. $89.50. ISBN: 0‐12‐297880‐3
inferredcites →https://doi.org/10.1073/pnas.0404206101openalex-snapshot
Prospects for inferring very large phylogenies by using the neighbor-joining method
inferredcites →https://doi.org/10.1073/pnas.1213199109openalex-snapshot
Estimating divergence times in large molecular phylogenies
inferredcites →https://doi.org/10.1073/pnas.1217027110openalex-snapshot
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution
inferredcites →https://doi.org/10.1073/pnas.230424497openalex-snapshot
The human sex-reversing ATRX gene has a homologue on the marsupial Y chromosome, ATRY: Implications for the evolution of mammalian sex determination
inferredcites →https://doi.org/10.1086/418540openalex-snapshot
Evolution of Facultative Paedomorphosis in Salamanders
inferredcites →https://doi.org/10.1089/10665270050081478openalex-snapshot
A Greedy Algorithm for Aligning DNA Sequences
inferredcites →https://doi.org/10.1093/acprof:oso/9780199657148.001.0001openalex-snapshot
The Evolution of Sex Determination
inferredcites →https://doi.org/10.1093/bib/bbs012openalex-snapshot
Using Tablet for visual exploration of second-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu368openalex-snapshot
Blue: correcting sequencing errors using consensus and context
inferredcites →https://doi.org/10.1093/genetics/164.2.613openalex-snapshot
Change of the Heterogametic Sex From Male to Female in the Frog
inferredcites →https://doi.org/10.1093/genetics/41.1.58openalex-snapshot
MAPPING CENTROMERES IN THE AXOLOTL
inferredcites →https://doi.org/10.1093/molbev/msv037openalex-snapshot
Tree of Life Reveals Clock-Like Speciation and Diversification
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkl1031openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/gks596openalex-snapshot
Primer3—new capabilities and interfaces
inferredcites →https://doi.org/10.1093/nar/gku1010openalex-snapshot
Ensembl 2015
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1098/rstb.2000.0717openalex-snapshot
The degeneration of Y chromosomes
inferredcites →https://doi.org/10.1101/gr.116491.110openalex-snapshot
Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
inferredcites →https://doi.org/10.1101/pdb.prot4455openalex-snapshot
Purification of Nucleic Acids by Extraction with Phenol:Chloroform
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02317.xopenalex-snapshot
The molecular phylogenetics of endangerment: cryptic variation and historical phylogeography of the California tiger salamander,Ambystoma californiense
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02591.xopenalex-snapshot
Cryptic recombination in the ever‐young sex chromosomes of H ylid frogs
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb00346.xopenalex-snapshot
SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05643.xopenalex-snapshot
EVOLUTION IN A PAEDOMORPHIC LINEAGE. I. AN ELECTROPHORETIC ANALYSIS OF THE MEXICAN AMBYSTOMATID SALAMANDERS
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05644.xopenalex-snapshot
EVOLUTION IN A PAEDOMORPHIC LINEAGE. II. ALLOMETRY AND FORM IN THE MEXICAN AMBYSTOMATID SALAMANDERS
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb00420.xopenalex-snapshot
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
inferredcites →https://doi.org/10.1111/j.1558-5646.1998.tb05132.xopenalex-snapshot
PERSPECTIVE: CHASE‐AWAY SEXUAL SELECTION: ANTAGONISTIC SEDUCTION VERSUS RESISTANCE
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00837.xopenalex-snapshot
SEX REVERSAL: A FOUNTAIN OF YOUTH FOR SEX CHROMOSOMES?
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01136.xopenalex-snapshot
SEX LINKAGE, SEX-SPECIFIC SELECTION, AND THE ROLE OF RECOMBINATION IN THE EVOLUTION OF SEXUALLY DIMORPHIC GENE EXPRESSION
inferredcites →https://doi.org/10.1111/jeb.12086openalex-snapshot
Low rates of X‐Y recombination, not turnovers, account for homomorphic sex chromosomes in several diploid species of Palearctic green toads (Bufo viridis subgroup)
inferredcites →https://doi.org/10.1139/g84-001openalex-snapshot
Genetic mapping in the Mexican axolotl, Ambystoma mexicanum
inferredcites →https://doi.org/10.1139/g85-076openalex-snapshot
Banding differences between tiger salamander and axolotl chromosomes
inferredcites →https://doi.org/10.1159/000446882openalex-snapshot
Evidence for Sex Chromosome Turnover in Proteid Salamanders
inferredcites →https://doi.org/10.1186/1471-2105-13-s4-s1openalex-snapshot
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
inferredcites →https://doi.org/10.1186/1471-213x-11-39openalex-snapshot
ATRX has a critical and conserved role in mammalian sexual differentiation
inferredcites →https://doi.org/10.1186/1471-2164-6-181openalex-snapshot
Sal-Site: Integrating new and existing ambystomatid salamander research and informational resources
inferredcites →https://doi.org/10.1186/1471-2164-7-219openalex-snapshot
Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2013-14-3-r26openalex-snapshot
RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome
inferredcites →https://doi.org/10.1242/dev.105072openalex-snapshot
Highly efficient targeted mutagenesis in axolotl using Cas9 RNA-guided nuclease
inferredcites →https://doi.org/10.1242/jcs.1.1.85openalex-snapshot
Chromosomes and nucleoli of the axolotl, Ambystoma mexicanum
inferredcites →https://doi.org/10.13023/etd.2017.508openalex-snapshot
Characterization of a Large Vertebrate Genome and Homomorphic Sex Chromosomes in the Axolotl, Ambystoma mexicanum
inferredcites →https://doi.org/10.1371/journal.pbio.1001062openalex-snapshot
Ever-Young Sex Chromosomes in European Tree Frogs
inferredcites →https://doi.org/10.1371/journal.pbio.1001643openalex-snapshot
Comparative Sex Chromosome Genomics in Snakes: Differentiation, Evolutionary Strata, and Lack of Global Dosage Compensation
inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot
Sex Determination: Why So Many Ways of Doing It?
inferredcites →https://doi.org/10.1371/journal.pgen.1002798openalex-snapshot
A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)
inferredcites →https://doi.org/10.1371/journal.pone.0067274openalex-snapshot
Variation in Salamander Tail Regeneration Is Associated with Genetic Factors That Determine Tail Morphology
inferredcites →https://doi.org/10.1534/genetics.105.046433openalex-snapshot
A Comprehensive Expressed Sequence Tag Linkage Map for Tiger Salamander and Mexican Axolotl: Enabling Gene Mapping and Comparative Genomics in Ambystoma
inferredcites →https://doi.org/10.1534/genetics.107.072033openalex-snapshot
Bird and Mammal Sex-Chromosome Orthologs Map to the Same Autosomal Region in a Salamander (Ambystoma)
inferredcites →https://doi.org/10.2307/1446229openalex-snapshot
Amphibian Cytogenetics and Evolution
inferredcites →https://doi.org/10.2307/2410811openalex-snapshot
The Polytypic Species Revisited: Genetic Differentiation and Molecular Phylogenetics of the Tiger Salamander Ambystoma tigrinum (Amphibia: Caudata) Complex
inferredcites →https://doi.org/10.32388/zjyi82openalex-snapshot
Alpha-thalassemia-X-linked intellectual disability syndrome
inferredcites →https://doi.org/10.3791/4215openalex-snapshot
Fluorescent in situ Hybridization on Mitotic Chromosomes of Mosquitoes

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inferred← citeshttps://doi.org/10.1007/s00412-019-00721-9openalex-snapshot
DNA transposon invasion and microsatellite accumulation guide W chromosome differentiation in a Neotropical fish genome
inferred← citeshttps://doi.org/10.1016/j.ygeno.2018.09.007openalex-snapshot
Characterization and function of the T-box 1 gene in Chinese giant salamander Andrias davidianus
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