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Demographic inference in a spatially-explicit ecological model from genomic data: a proof of concept for the Mojave Desert Tortoise

https://doi.org/10.1101/354530
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/tpbi.2001.1557openalex-snapshot
Neutral Evolution in Spatially Continuous Populations
inferredcites →https://doi.org/10.1007/978-0-387-84858-7openalex-snapshot
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
inferredcites →https://doi.org/10.1016/j.ajhg.2013.07.006openalex-snapshot
Genetic Evidence for Recent Population Mixture in India
inferredcites →https://doi.org/10.1016/j.biocon.2009.06.025openalex-snapshot
Vital rate sensitivity analysis as a tool for assessing management actions for the desert tortoise
inferredcites →https://doi.org/10.1016/j.jaridenv.2005.06.020openalex-snapshot
A highway's road-effect zone for desert tortoises (Gopherus agassizii)
inferredcites →https://doi.org/10.1023/a:1010933404324openalex-snapshot
Random Forests
inferredcites →https://doi.org/10.1038/nature08365openalex-snapshot
Reconstructing Indian population history
inferredcites →https://doi.org/10.1038/ng.3464openalex-snapshot
Visualizing spatial population structure with estimated effective migration surfaces
inferredcites →https://doi.org/10.1073/pnas.1601063113openalex-snapshot
Inferring responses to climate dynamics from historical demography in neotropical forest lizards
inferredcites →https://doi.org/10.1093/bioinformatics/bti584openalex-snapshot
simuPOP: a forward-time population genetics simulation environment
inferredcites →https://doi.org/10.1093/bioinformatics/btq579openalex-snapshot
SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination
inferredcites →https://doi.org/10.1093/bioinformatics/btr124openalex-snapshot
fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
inferredcites →https://doi.org/10.1093/molbev/msv332openalex-snapshot
Long-Distance Dispersal Shaped Patterns of Human Genetic Diversity in Eurasia
inferredcites →https://doi.org/10.1093/oso/9780195076318.001.0001openalex-snapshot
Quantitative Fish Dynamics
inferredcites →https://doi.org/10.1098/rsbl.2015.0983openalex-snapshot
Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus ) in New York City
inferredcites →https://doi.org/10.1098/rspb.2016.0957openalex-snapshot
Interactions between demography, genetics, and landscape connectivity increase extinction probability for a small population of large carnivores in a major metropolitan area
inferredcites →https://doi.org/10.1101/195743openalex-snapshot
Desert Tortoises in the Genomic Age: Population Genetics and the Landscape
inferredcites →https://doi.org/10.1111/1365-2664.12774openalex-snapshot
Habitat drives dispersal and survival of translocated juvenile desert tortoises
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb00500.xopenalex-snapshot
ISOLATION BY RESISTANCE
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04122.xopenalex-snapshot
Landscape genetics and least‐cost path analysis reveal unexpected dispersal routes in the California tiger salamander (Ambystoma californiense)
inferredcites →https://doi.org/10.1111/j.1469-1795.2009.00339.xopenalex-snapshot
Genetic data in population viability analysis: case studies with ambystomatid salamanders
inferredcites →https://doi.org/10.1111/j.1469-1809.1949.tb02451.xopenalex-snapshot
THE GENETICAL STRUCTURE OF POPULATIONS
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1128/iai.62.10.4580-4586.1994openalex-snapshot
Mycoplasma agassizii causes upper respiratory tract disease in the desert tortoise
inferredcites →https://doi.org/10.1186/1479-7364-3-1-79openalex-snapshot
A survey of genetic simulation software for population and epidemiological studies
inferredcites →https://doi.org/10.13172/2054-197x-1-1-853openalex-snapshot
Approximation Bayesian computation
inferredcites →https://doi.org/10.1371/journal.pcbi.1004842openalex-snapshot
Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes
inferredcites →https://doi.org/10.1371/journal.pcbi.1006581openalex-snapshot
Efficient pedigree recording for fast population genetics simulation
inferredcites →https://doi.org/10.1534/genetics.103.022830openalex-snapshot
A Separation-of-Timescales Approach to the Coalescent in a Continuous Population
inferredcites →https://doi.org/10.1534/genetics.115.183913openalex-snapshot
Admixture, Population Structure, and F -Statistics
inferredcites →https://doi.org/10.1534/genetics.116.191379openalex-snapshot
Reconstructing Demography and Social Behavior During the Neolithic Expansion from Genomic Diversity Across Island Southeast Asia
inferredcites →https://doi.org/10.1534/genetics.116.196220openalex-snapshot
Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks
inferredcites →https://doi.org/10.1534/genetics.118.301333openalex-snapshot
Inferring Continuous and Discrete Population Genetic Structure Across Space
inferredcites →https://doi.org/10.1890/02-0448openalex-snapshot
SPATIAL PATTERN OF RISK OF COMMON RAVEN PREDATION ON DESERT TORTOISES
inferredcites →https://doi.org/10.2307/1941949openalex-snapshot
Modeling Population Viability for the Desert Tortoise in the Western Mojave Desert
inferredcites →https://doi.org/10.3133/ofr20091102openalex-snapshot
Modeling habitat of the desert tortoise (Gopherus agassizii) in the Mojave and parts of the Sonoran Deserts of California, Nevada, Utah, and Arizona
inferredcites →https://doi.org/10.3354/esr00298openalex-snapshot
Effects of subsidized predators, resource variability, and human population density on desert tortoise populations in the Mojave Desert, USA
inferredcites →https://doi.org/10.5860/choice.187286openalex-snapshot
Biology and conservation of North American tortoises

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/molbev/msz178openalex-snapshot
A Three-Sample Test for Introgression
inferred← citeshttps://doi.org/10.1101/457556openalex-snapshot
Detecting spatial dynamics of range expansions with geo-referenced genomewide SNP data and the geographic spectrum of shared alleles
inferred← citeshttps://doi.org/10.1111/1755-0998.13035openalex-snapshot
Are populations like a circuit? Comparing isolation by resistance to a new coalescent‐based method
inferred← citeshttps://doi.org/10.1534/genetics.120.303143openalex-snapshot
Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data
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