On the public citation graph

Genomics of Cryptococcus neoformans

https://doi.org/10.1101/356816
0 signed · 55 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.gene.2005.03.032openalex-snapshot
RNA maturation in mitochondria of S. cerevisiae and S. pombe
inferredcites →https://doi.org/10.1016/s1473-3099(17)30243-8openalex-snapshot
Global burden of disease of HIV-associated cryptococcal meningitis: an updated analysis
inferredcites →https://doi.org/10.1038/nature03448openalex-snapshot
Sexual reproduction between partners of the same mating type in Cryptococcus neoformans
inferredcites →https://doi.org/10.1038/ncomms6194openalex-snapshot
‘Division of labour’ in response to host oxidative burst drives a fatal Cryptococcus gattii outbreak
inferredcites →https://doi.org/10.1038/nrmicro1245openalex-snapshot
Deciphering the Model Pathogenic Fungus Cryptococcus Neoformans
inferredcites →https://doi.org/10.1038/s41477-017-0017-5openalex-snapshot
Quantifying airborne dispersal routes of pathogens over continents to safeguard global wheat supply
inferredcites →https://doi.org/10.1056/nejmoa1110404openalex-snapshot
Combination Antifungal Therapy for Cryptococcal Meningitis
inferredcites →https://doi.org/10.1056/nejmoa1509024openalex-snapshot
Adjunctive Dexamethasone in HIV-Associated Cryptococcal Meningitis
inferredcites →https://doi.org/10.1073/pnas.0902963106openalex-snapshot
The fatal fungal outbreak on Vancouver Island is characterized by enhanced intracellular parasitism driven by mitochondrial regulation
inferredcites →https://doi.org/10.1073/pnas.1714718115openalex-snapshot
Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella
inferredcites →https://doi.org/10.1080/10635150215878openalex-snapshot
New Inferences from Tree Shape: Numbers of Missing Taxa and Population Growth Rates
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr521openalex-snapshot
adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/bty212openalex-snapshot
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1097/qad.0b013e328322ffacopenalex-snapshot
Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS
inferredcites →https://doi.org/10.1099/mgen.0.000086openalex-snapshot
CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
inferredcites →https://doi.org/10.1099/mic.0.2007/015594-0openalex-snapshot
Long-distance dispersal and recombination in environmental populations of Cryptococcus neoformans var. grubii from India
inferredcites →https://doi.org/10.1101/190785openalex-snapshot
Multilocus Sequence Typing Reveals A Unique Co-Dominant Population Structure of Cryptococcus Neoformans Var. Grubii in Vietnam
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
inferredcites →https://doi.org/10.1101/gr.218727.116openalex-snapshot
Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans
inferredcites →https://doi.org/10.1111/mec.13891openalex-snapshot
Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV / AIDS cohort
inferredcites →https://doi.org/10.1126/science.1072678openalex-snapshot
Aerial Dispersal of Pathogens on the Global and Continental Scales and Its Impact on Plant Disease
inferredcites →https://doi.org/10.1128/iai.00542-09openalex-snapshot
Spores as Infectious Propagules ofCryptococcus neoformans
inferredcites →https://doi.org/10.1128/jcm.01384-17openalex-snapshot
Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans
inferredcites →https://doi.org/10.1128/jcm.01985-10openalex-snapshot
Most Cases of Cryptococcal Meningitis in HIV-Uninfected Patients in Vietnam Are Due to a Distinct Amplified Fragment Length Polymorphism-Defined Cluster of Cryptococcus neoformans var. grubii VN1
inferredcites →https://doi.org/10.1128/jcm.37.10.3204-3209.1999openalex-snapshot
Epidemiological Evidence for Dormant Cryptococcus neoformans Infection
inferredcites →https://doi.org/10.1128/mbio.00166-17openalex-snapshot
Microevolution of Serial Clinical Isolates ofCryptococcus neoformansvar.grubiiandC. gattii
inferredcites →https://doi.org/10.1128/mbio.00196-12openalex-snapshot
Cryptococcal Genotype Influences Immunologic Response and Human Clinical Outcome after Meningitis
inferredcites →https://doi.org/10.1128/mbio.01494-14openalex-snapshot
Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution
inferredcites →https://doi.org/10.1128/mbio.01501-16openalex-snapshot
A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens
inferredcites →https://doi.org/10.1146/annurev.micro.60.080805.142102openalex-snapshot
The Biology of theCryptococcus neoformansSpecies Complex
inferredcites →https://doi.org/10.1146/annurev.phyto.32.1.523openalex-snapshot
MODELING STOCHASTIC PROCESSES IN PLANT PATHOLOGY
inferredcites →https://doi.org/10.1175/1520-0469(1963)020<0130:dnf>2.0.co;2openalex-snapshot
Deterministic Nonperiodic Flow
inferredcites →https://doi.org/10.1186/1471-2105-11-24openalex-snapshot
ETE: a python Environment for Tree Exploration
inferredcites →https://doi.org/10.1186/1471-2334-10-199openalex-snapshot
A prospective descriptive study of cryptococcal meningitis in HIV uninfected patients in Vietnam - high prevalence of Cryptococcus neoformans var grubii in the absence of underlying disease
inferredcites →https://doi.org/10.1186/s13059-016-0997-xopenalex-snapshot
Mash: fast genome and metagenome distance estimation using MinHash
inferredcites →https://doi.org/10.1371/journal.pbio.1001653openalex-snapshot
Unisexual and Heterosexual Meiotic Reproduction Generate Aneuploidy and Phenotypic Diversity De Novo in the Yeast Cryptococcus neoformans
inferredcites →https://doi.org/10.1371/journal.pntd.0002297openalex-snapshot
Molecular Epidemiology Reveals Genetic Diversity amongst Isolates of the Cryptococcus neoformans/C. gattii Species Complex in Thailand
inferredcites →https://doi.org/10.1371/journal.pntd.0004042openalex-snapshot
Economic Impact of Dengue: Multicenter Study across Four Brazilian Regions
inferredcites →https://doi.org/10.1371/journal.pntd.0004446openalex-snapshot
A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions
inferredcites →https://doi.org/10.1371/journal.pntd.0005223openalex-snapshot
MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil
inferredcites →https://doi.org/10.1371/journal.pntd.0005628openalex-snapshot
Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in Vietnam
inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
inferredcites →https://doi.org/10.1371/journal.pone.0072626openalex-snapshot
Neural and Behavioral Evidence for an Intrinsic Cost of Self-Control
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.1371/journal.pone.0193237openalex-snapshot
Genotypic analysis of clinical and environmental Cryptococcus neoformans isolates from Brazil reveals the presence of VNB isolates and a correlation with biological factors
inferredcites →https://doi.org/10.1371/journal.ppat.1001343openalex-snapshot
Low Diversity Cryptococcus neoformans Variety grubii Multilocus Sequence Types from Thailand Are Consistent with an Ancestral African Origin
inferredcites →https://doi.org/10.1534/genetics.105.046672openalex-snapshot
Multilocus Sequence Typing Reveals Three Genetic Subpopulations of Cryptococcus neoformans var. grubii (Serotype A), Including a Unique Population in Botswana
inferredcites →https://doi.org/10.1534/genetics.116.195784openalex-snapshot
Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species
inferredcites →https://doi.org/10.1534/genetics.117.203836openalex-snapshot
Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1128/mbio.01440-19openalex-snapshot
Identification of Pathogen Genomic Differences That Impact Human Immune Response and Disease during Cryptococcus neoformans Infection
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.