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Tip rates, phylogenies, and diversification: what are we estimating, and how good are the estimates?

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0169-5347(96)81059-7openalex-snapshot

Reconstructing shifts in diversification rates on phylogenetic trees

inferredcites →https://doi.org/10.1016/j.aml.2010.06.021openalex-snapshot

The expected length of pendant and interior edges of a Yule tree

inferredcites →https://doi.org/10.1016/j.tree.2014.01.010openalex-snapshot

Why does diversification slow down?

inferredcites →https://doi.org/10.1038/nature11631openalex-snapshot

The global diversity of birds in space and time

inferredcites →https://doi.org/10.1038/nature25794openalex-snapshot

Global elevational diversity and diversification of birds

inferredcites →https://doi.org/10.1038/s41559-018-0494-6openalex-snapshot

Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary

inferredcites →https://doi.org/10.1038/s41586-018-0273-1openalex-snapshot

An inverse latitudinal gradient in speciation rate for marine fishes

inferredcites →https://doi.org/10.1073/pnas.0811087106openalex-snapshot

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

inferredcites →https://doi.org/10.1073/pnas.1115169109openalex-snapshot

Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes

inferredcites →https://doi.org/10.1073/pnas.1518659113openalex-snapshot

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

inferredcites →https://doi.org/10.1073/pnas.89.17.8322openalex-snapshot

Tempo and mode of evolution revealed from molecular phylogenies.

inferredcites →https://doi.org/10.1080/10635150701607033openalex-snapshot

Estimating a Binary Character's Effect on Speciation and Extinction

inferredcites →https://doi.org/10.1086/588076openalex-snapshot

Relating Traits to Diversification: A Simple Test

inferredcites →https://doi.org/10.1086/667574openalex-snapshot

A Conceptual and Statistical Framework for Adaptive Radiations with a Key Role for Diversity Dependence

inferredcites →https://doi.org/10.1086/684193openalex-snapshot

Speciation, Ecological Opportunity, and Latitude

inferredcites →https://doi.org/10.1093/oso/9780198570851.001.0001openalex-snapshot

Ecology and Evolution of Flowers

inferredcites →https://doi.org/10.1093/oso/9780198570851.003.0017openalex-snapshot

Floral characters and species diversification

inferredcites →https://doi.org/10.1093/sysbio/syp067openalex-snapshot

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

inferredcites →https://doi.org/10.1093/sysbio/syq053openalex-snapshot

Quantitative Traits and Diversification

inferredcites →https://doi.org/10.1093/sysbio/syr029openalex-snapshot

Simulating Trees with a Fixed Number of Extant Species

inferredcites →https://doi.org/10.1093/sysbio/syr046openalex-snapshot

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

inferredcites →https://doi.org/10.1093/sysbio/syr091openalex-snapshot

Prolonging the Past Counteracts the Pull of the Present: Protracted Speciation Can Explain Observed Slowdowns in Diversification

inferredcites →https://doi.org/10.1093/sysbio/sys094openalex-snapshot

Going to Extremes: Contrasting Rates of Diversification in a Recent Radiation of New World Passerine Birds

inferredcites →https://doi.org/10.1093/sysbio/syu025openalex-snapshot

Analysis and Visualization of Complex Macroevolutionary Dynamics: An Example from Australian Scincid Lizards

inferredcites →https://doi.org/10.1093/sysbio/syu070openalex-snapshot

The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters

inferredcites →https://doi.org/10.1093/sysbio/syu131openalex-snapshot

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

inferredcites →https://doi.org/10.1093/sysbio/syv062openalex-snapshot

Detecting Macroevolutionary Self-Destruction from Phylogenies

inferredcites →https://doi.org/10.1093/sysbio/syw022openalex-snapshot

Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction

inferredcites →https://doi.org/10.1093/sysbio/syx037openalex-snapshot

Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models

inferredcites →https://doi.org/10.1093/sysbio/syy035openalex-snapshot

Inferring Diversification Rate Variation From Phylogenies With Fossils

inferredcites →https://doi.org/10.1093/sysbio/syy037openalex-snapshot

How Well Can We Estimate Diversity Dynamics for Clades in Diversity Decline?

inferredcites →https://doi.org/10.1098/rspb.2000.1278openalex-snapshot

Testing macro–evolutionary models using incomplete molecular phylogenies

inferredcites →https://doi.org/10.1098/rspb.2014.2889openalex-snapshot

Minimal effects of latitude on present-day speciation rates in New World birds

inferredcites →https://doi.org/10.1098/rstb.1994.0054openalex-snapshot

Extinction rates can be estimated from molecular phylogenies

inferredcites →https://doi.org/10.1098/rstb.1994.0068openalex-snapshot

The reconstructed evolutionary process

inferredcites →https://doi.org/10.1098/rstb.2003.1392openalex-snapshot

The tempo of avian diversification during the Quaternary

inferredcites →https://doi.org/10.1111/2041-210x.12199openalex-snapshot

BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

inferredcites →https://doi.org/10.1111/2041-210x.12531openalex-snapshot

PHYLOMETRICS: an R package for detecting macroevolutionary patterns, using phylogenetic metrics and backward tree simulation

inferredcites →https://doi.org/10.1111/2041-210x.12626openalex-snapshot

Bayesian model selection with BAMM: effects of the model prior on the inferred number of diversification shifts

inferredcites →https://doi.org/10.1111/2041-210x.12949openalex-snapshot

Continuous traits and speciation rates: Alternatives to state‐dependent diversification models

inferredcites →https://doi.org/10.1111/ele.12438openalex-snapshot

Relative roles of ecological and energetic constraints, diversification rates and region history on global species richness gradients

inferredcites →https://doi.org/10.1111/evo.12614openalex-snapshot

Extinction can be estimated from moderately sized molecular phylogenies

inferredcites →https://doi.org/10.1111/evo.13080openalex-snapshot

Does the colonization of new biogeographic regions influence the diversification and accumulation of clade richness among the Corvides (Aves: Passeriformes)?

inferredcites →https://doi.org/10.1111/evo.13088openalex-snapshot

Speciation is associated with changing ornamentation rather than stronger sexual selection

inferredcites →https://doi.org/10.1111/evo.13227openalex-snapshot

FiSSE: A simple nonparametric test for the effects of a binary character on lineage diversification rates

inferredcites →https://doi.org/10.1111/evo.13378openalex-snapshot

Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts

inferredcites →https://doi.org/10.1111/evo.13602openalex-snapshot

Hidden state models improve state-dependent diversification approaches, including biogeographical models

inferredcites →https://doi.org/10.1111/geb.12471openalex-snapshot

Species and functional diversity accumulate differently in mammals

inferredcites →https://doi.org/10.1111/j.1461-0248.2007.01020.xopenalex-snapshot

Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography

inferredcites →https://doi.org/10.1111/j.1461-0248.2010.01463.xopenalex-snapshot

Protracted speciation revitalizes the neutral theory of biodiversity

inferredcites →https://doi.org/10.1111/j.1523-1739.2006.00555.xopenalex-snapshot

Incorporating Evolutionary Measures into Conservation Prioritization

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00409.xopenalex-snapshot

EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00926.xopenalex-snapshot

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

inferredcites →https://doi.org/10.1111/j.1558-5646.2010.00971.xopenalex-snapshot

DISCOVERING EXCEPTIONAL DIVERSIFICATIONS AT CONTINENTAL SCALES: THE CASE OF THE ENDEMIC FAMILIES OF NEOTROPICAL SUBOSCINE PASSERINES

inferredcites →https://doi.org/10.1111/jbi.12709openalex-snapshot

Time best explains global variation in species richness of amphibians, birds and mammals

inferredcites →https://doi.org/10.1111/jbi.13156openalex-snapshot

What makes the Sino‐Himalayan mountains the major diversity hotspots for pheasants?

inferredcites →https://doi.org/10.1111/jeb.12460openalex-snapshot

How traits shape trees: new approaches for detecting character state‐dependent lineage diversification

inferredcites →https://doi.org/10.1146/annurev.ecolsys.39.110707.173510openalex-snapshot

Species Selection: Theory and Data

inferredcites →https://doi.org/10.1186/1471-2148-11-311openalex-snapshot

A Bayesian framework to estimate diversification rates and their variation through time and space

inferredcites →https://doi.org/10.1371/journal.pone.0025780openalex-snapshot

The Molecular Phylogenetic Signature of Clades in Decline

inferredcites →https://doi.org/10.1371/journal.pone.0089543openalex-snapshot

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

inferredcites →https://doi.org/10.1890/0012-9658(2006)87[2468:gvitdr]2.0.co;2openalex-snapshot

GLOBAL VARIATION IN THE DIVERSIFICATION RATE OF PASSERINE BIRDS

inferredcites →https://doi.org/10.2307/3545569openalex-snapshot

Latitudinal Gradients in Species Diversity: The Search for the Primary Cause

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-030-31167-4_6openalex-snapshot

Evolutionary Imprints on Species Distribution Patterns Across the Neotropics

inferred← citeshttps://doi.org/10.1101/2022.09.27.509719openalex-snapshot

Testing the evolutionary drivers of nitrogen-fixing symbioses in challenging soil environments

inferred← citeshttps://doi.org/10.1101/717306openalex-snapshot

Polyploidy increases overall diversity despite higher turnover than diploids in the Brassicaceae

inferred← citeshttps://doi.org/10.1111/ele.70008openalex-snapshot

Biodiversity Patterns Redefined in Environmental Space

inferred← citeshttps://doi.org/10.1111/evo.13811openalex-snapshot

Larger brains spur species diversification in birds

inferred← citeshttps://doi.org/10.1111/jeb.13737openalex-snapshot

Historical climatic instability predicts the inverse latitudinal pattern in speciation rate of modern mammalian biota

inferred← citeshttps://doi.org/10.1111/nph.70330openalex-snapshot

Diversification patterns of the southwest Australian biodiversity hotspot reveal a novel macroevolutionary pathway to plant hyperdiversity

inferred← citeshttps://doi.org/10.1371/journal.pbio.3000494openalex-snapshot

Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation

inferred← citeshttps://doi.org/10.1371/journal.pbio.3001414openalex-snapshot

Rapid increase in snake dietary diversity and complexity following the end-Cretaceous mass extinction

inferred← citeshttps://doi.org/10.1371/journal.pone.0338966openalex-snapshot

The latitudinal speciation gradient in freshwater fishes: Higher speciation across assemblages at higher latitudes in the northern hemisphere

inferred← citeshttps://doi.org/10.24072/pcjournal.345openalex-snapshot

Colour polymorphism and conspicuousness do not increase speciation rates in Lacertids

inferred← citeshttps://doi.org/10.32942/x2631wopenalex-snapshot

A Critique of Thompson and Ramírez-Barahona (2023) or: How I Learned to Stop Worrying and Love the Fossil Record

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