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For common community phylogenetic analyses, go ahead and use synthesis phylogenies

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1019openalex-snapshot

Constructing a broadly inclusive seed plant phylogeny

inferredcites →https://doi.org/10.1002/ajb2.1168openalex-snapshot

Community phylogeny of the globally critically imperiled pine rockland ecosystem

inferredcites →https://doi.org/10.1016/0006-3207(92)91201-3openalex-snapshot

Conservation evaluation and phylogenetic diversity

inferredcites →https://doi.org/10.1016/j.isci.2018.12.002openalex-snapshot

Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates

inferredcites →https://doi.org/10.1038/44766openalex-snapshot

Inferring the historical patterns of biological evolution

inferredcites →https://doi.org/10.1038/nature05587openalex-snapshot

Preserving the evolutionary potential of floras in biodiversity hotspots

inferredcites →https://doi.org/10.1038/nature05634openalex-snapshot

The delayed rise of present-day mammals

inferredcites →https://doi.org/10.1038/nature11631openalex-snapshot

The global diversity of birds in space and time

inferredcites →https://doi.org/10.1038/nature12872openalex-snapshot

Three keys to the radiation of angiosperms into freezing environments

inferredcites →https://doi.org/10.1038/ncomms2958openalex-snapshot

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation

inferredcites →https://doi.org/10.1073/pnas.0406166101openalex-snapshot

Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator

inferredcites →https://doi.org/10.1073/pnas.1423041112openalex-snapshot

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

inferredcites →https://doi.org/10.1080/10635150600852011openalex-snapshot

Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects

inferredcites →https://doi.org/10.1086/656486openalex-snapshot

Phylogenetic Metrics of Community Similarity

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/btn358openalex-snapshot

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/molbev/msx116openalex-snapshot

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/sysbio/syw066openalex-snapshot

Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa

inferredcites →https://doi.org/10.1098/rspb.2001.1782openalex-snapshot

Evolution of the angiosperms: calibrating the family tree

inferredcites →https://doi.org/10.1098/rstb.2011.0021openalex-snapshot

Phylogenetic structure of mammal assemblages at large geographical scales: linking phylogenetic community ecology with macroecology

inferredcites →https://doi.org/10.1111/1365-2435.12429openalex-snapshot

Phylogenetic diversity–ecosystem function relationships are insensitive to phylogenetic edge lengths

inferredcites →https://doi.org/10.1111/2041-210x.12051openalex-snapshot

Congruification: support for time scaling large phylogenetic trees

inferredcites →https://doi.org/10.1111/2041-210x.12055openalex-snapshot

phyloGenerator: an automated phylogeny generation tool for ecologists

inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

inferredcites →https://doi.org/10.1111/brv.12252openalex-snapshot

A guide to phylogenetic metrics for conservation, community ecology and macroecology

inferredcites →https://doi.org/10.1111/ddi.12542openalex-snapshot

Fire exclusion and climate change interact to affect long‐term changes in the functional composition of plant communities

inferredcites →https://doi.org/10.1111/ecog.01814openalex-snapshot

PhyloMeasures: a package for computing phylogenetic biodiversity measures and their statistical moments

inferredcites →https://doi.org/10.1111/ecog.02070openalex-snapshot

Phylogenetic community structure metrics and null models: a review with new methods and software

inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00285.xopenalex-snapshot

TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE

inferredcites →https://doi.org/10.1111/j.1095-8339.2009.00996.xopenalex-snapshot

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

inferredcites →https://doi.org/10.1111/j.1365-2311.2010.01224.xopenalex-snapshot

Revealing secret liaisons: DNA barcoding changes our understanding of food webs

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.04001.xopenalex-snapshot

Emerging patterns in the comparative analysis of phylogenetic community structure

inferredcites →https://doi.org/10.1111/j.1461-0248.2007.01083.xopenalex-snapshot

Separating the determinants of phylogenetic community structure

inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01307.xopenalex-snapshot

Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics

inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01314.xopenalex-snapshot

The merging of community ecology and phylogenetic biology

inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00829.xopenalex-snapshot

Phylomatic: tree assembly for applied phylogenetics

inferredcites →https://doi.org/10.1111/j.1600-0587.2013.00631.xopenalex-snapshot

Diversity and phylogenetic community structure of ants along a Costa Rican elevational gradient

inferredcites →https://doi.org/10.1111/j.2041-210x.2012.00196.xopenalex-snapshot

How to measure and test phylogenetic signal

inferredcites →https://doi.org/10.1111/jbi.13073openalex-snapshot

Riders in the sky (islands): Using a mega‐phylogenetic approach to understand plant species distribution and coexistence at the altitudinal limits of angiosperm plant life

inferredcites →https://doi.org/10.1111/jse.12161openalex-snapshot

Are phylogenies derived from family‐level supertrees robust for studies on macroecological patterns along environmental gradients?

inferredcites →https://doi.org/10.1111/mec.14520openalex-snapshot

Taxon sampling effects on the quantification and comparison of community phylogenetic diversity

inferredcites →https://doi.org/10.1111/nph.14397openalex-snapshot

Can functional traits account for phylogenetic signal in community composition?

inferredcites →https://doi.org/10.1126/science.1143082openalex-snapshot

Influence of Phylogeny on Fungal Community Assembly and Ecosystem Functioning

inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

inferredcites →https://doi.org/10.1146/annurev-ecolsys-102209-144628openalex-snapshot

Biodiversity and Climate Change: Integrating Evolutionary and Ecological Responses of Species and Communities

inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150448openalex-snapshot

Phylogenies and Community Ecology

inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot

BEAST: Bayesian evolutionary analysis by sampling trees

inferredcites →https://doi.org/10.1186/1471-2148-9-37openalex-snapshot

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

inferredcites →https://doi.org/10.1186/s12862-017-0898-yopenalex-snapshot

Revisiting phylogenetic signal; strong or negligible impacts of polytomies and branch length information?

inferredcites →https://doi.org/10.1371/journal.pone.0004390openalex-snapshot

Phylogenetic Resolution and Quantifying the Phylogenetic Diversity and Dispersion of Communities

inferredcites →https://doi.org/10.1371/journal.pone.0052967openalex-snapshot

Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes

inferredcites →https://doi.org/10.1371/journal.pone.0126662openalex-snapshot

Community Phylogenetics: Assessing Tree Reconstruction Methods and the Utility of DNA Barcodes

inferredcites →https://doi.org/10.1554/0014-3820(2003)057[0717:tfpsic]2.0.co;2openalex-snapshot

TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE

inferredcites →https://doi.org/10.1644/14-mamm-a-007openalex-snapshot

Investigating sensitivity of phylogenetic community structure metrics using North American desert bats

inferredcites →https://doi.org/10.1890/0012-9658(2006)87[109:psofpc]2.0.co;2openalex-snapshot

PHYLOGENETIC STRUCTURE OF FLORIDIAN PLANT COMMUNITIES DEPENDS ON TAXONOMIC AND SPATIAL SCALE

inferredcites →https://doi.org/10.1890/11-0502.1openalex-snapshot

Shocks to the system: community assembly of the oak savanna in a 40‐year fire frequency experiment

inferredcites →https://doi.org/10.1890/11-1360.1openalex-snapshot

Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.5860/choice.50-4979openalex-snapshot

Tree thinking: an introduction to phylogenetic biology

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/1755-0998.13817openalex-snapshot

Launching insectphylo.org; a new hub facilitating construction and use of synthesis molecular phylogenies of insects

inferred← citeshttps://doi.org/10.1111/ecog.05934openalex-snapshot

Both source‐ and recipient‐range phylogenetic community structure can predict the outcome of avian introductions

inferred← citeshttps://doi.org/10.1111/gcb.17241openalex-snapshot

Substantial urbanization‐driven declines of larval and adult moths in a subtropical environment

inferred← citeshttps://doi.org/10.1111/nph.20126openalex-snapshot

Non‐native plants tend to be phylogenetically distant but functionally similar to native plants under intense disturbance at the Three Gorges Reservoir Area

inferred← citeshttps://doi.org/10.1186/s40663-019-0191-1openalex-snapshot

Understorey phylogenetic diversity in thermophilous deciduous forests: overstorey species identity can matter more than species richness

inferred← citeshttps://doi.org/10.1590/1982-0224-2020-0126openalex-snapshot

Taxonomic and phylogenetic beta diversity in headwater stream fish communities of the Paraná and Paraguai River basins

inferred← citeshttps://doi.org/10.20417/nzjecol.45.23openalex-snapshot

Native and exotic grasses share generalist foliar fungi in a Canterbury high country grassland

inferred← citeshttps://doi.org/10.21203/rs.3.rs-4173630/v1openalex-snapshot

Urbanization decreases richness but not the phylogenetic and functional diversity of bees

inferred← citeshttps://doi.org/10.3390/biology9080199openalex-snapshot

Spatial Phylogenetics, Biogeographical Patterns and Conservation Implications of the Endemic Flora of Crete (Aegean, Greece) under Climate Change Scenarios

inferred← citeshttps://doi.org/10.3897/biss.3.36207openalex-snapshot

Linking Biodiversity Data Using Evolutionary History

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