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Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Microbial Ecology of the Oceans
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Protistan Grazing on Marine Bacterioplankton
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Seafaring in the 21St Century: The Malaspina 2010 Circumnavigation Expedition
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ggplot2: Elegant Graphics for Data Analysis
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Community assembly: when should history matter?
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Ecological Geography of the Sea
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TOWARD AN ECOLOGICAL GEOGRAPHY OF THE SEA
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Patterns of Rare and Abundant Marine Microbial Eukaryotes
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Marine Protists Are Not Just Big Bacteria
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The importance of physical isolation to microbial diversification
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Basic Local Alignment Search Tool
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Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
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Stochastic and deterministic assembly processes in subsurface microbial communities
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Biogeography of the uncultured marine picoeukaryote MAST-4: temperature-driven distribution patterns
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Quantifying community assembly processes and identifying features that impose them
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Global diversity and biogeography of deep-sea pelagic prokaryotes
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A family of interaction-adjusted indices of community similarity
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Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities
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Multi-stability and the origin of microbial community types
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Importance of salt fingering for new nitrogen supply in the oligotrophic ocean
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UPARSE: highly accurate OTU sequences from microbial amplicon reads
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Microbial biogeography: putting microorganisms on the map
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Beyond biogeographic patterns: processes shaping the microbial landscape
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Microbial interactions: from networks to models
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Large-scale ocean connectivity and planktonic body size
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Function and functional redundancy in microbial systems
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Ubiquitous abundance distribution of non-dominant plankton across the global ocean
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Abundance–occupancy relationships
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Temperature dependence of metabolic rates for microbial growth, maintenance, and survival
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Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist
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Dormancy contributes to the maintenance of microbial diversity
inferredcites →https://doi.org/10.1073/pnas.1000604107openalex-snapshot
Combined niche and neutral effects in a microbial wastewater treatment community
inferredcites →https://doi.org/10.1073/pnas.1001380107openalex-snapshot
Limits to gene flow in a cosmopolitan marine planktonic diatom
inferredcites →https://doi.org/10.1073/pnas.1405637111openalex-snapshot
The transition between the niche and neutral regimes in ecology
inferredcites →https://doi.org/10.1073/pnas.1612346114openalex-snapshot
Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow
inferredcites →https://doi.org/10.1073/pnas.1711842115openalex-snapshot
The biomass distribution on Earth
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Prokaryotes: The unseen majority
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Conceptual Synthesis in Community Ecology
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APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btq166openalex-snapshot
Picante: R tools for integrating phylogenies and ecology
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/bts342openalex-snapshot
Associating microbiome composition with environmental covariates using generalized UniFrac distances
inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
inferredcites →https://doi.org/10.1093/bioinformatics/bty734openalex-snapshot
FastSpar: rapid and scalable correlation estimation for compositional data
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gku1341openalex-snapshot
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
inferredcites →https://doi.org/10.1093/plankt/21.2.343openalex-snapshot
Long-term survival of marine planktonic diatoms and dinoflagellates in stored sediment samples
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1111/1462-2920.12043openalex-snapshot
Eukaryotic versus prokaryotic marine picoplankton ecology
inferredcites →https://doi.org/10.1111/1462-2920.14265openalex-snapshot
Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes
inferredcites →https://doi.org/10.1111/1574-6976.12019openalex-snapshot
Microbial syntrophy: interaction for the common good
inferredcites →https://doi.org/10.1111/brv.12154openalex-snapshot
Phylogenetic niche conservatism and the evolutionary basis of ecological speciation
inferredcites →https://doi.org/10.1111/ele.12141openalex-snapshot
Beta diversity as the variance of community data: dissimilarity coefficients and partitioning
inferredcites →https://doi.org/10.1111/fwb.12533openalex-snapshot
Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects
inferredcites →https://doi.org/10.1111/j.1365-2699.2010.02357.xopenalex-snapshot
Synthesizing traditional biogeography with microbial ecology: the importance of dormancy
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
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Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species
inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01413.xopenalex-snapshot
Regional invariance among microbial communities
inferredcites →https://doi.org/10.1111/j.1461-0248.2011.01644.xopenalex-snapshot
Phylogenetic limiting similarity and competitive exclusion
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00956.xopenalex-snapshot
Quantifying the roles of immigration and chance in shaping prokaryote community structure
inferredcites →https://doi.org/10.1111/j.1758-2229.2011.00257.xopenalex-snapshot
Local and regional factors influencing bacterial community assembly
inferredcites →https://doi.org/10.1111/mec.12640openalex-snapshot
Bacterial taxa–area and distance–decay relationships in marine environments
inferredcites →https://doi.org/10.1111/mec.13365openalex-snapshot
Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean
inferredcites →https://doi.org/10.1126/science.1118052openalex-snapshot
Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients
inferredcites →https://doi.org/10.1126/science.1138544openalex-snapshot
Emergent Biogeography of Microbial Communities in a Model Ocean
inferredcites →https://doi.org/10.1126/science.1153213openalex-snapshot
The Microbial Engines That Drive Earth's Biogeochemical Cycles
inferredcites →https://doi.org/10.1126/science.1174159openalex-snapshot
Controls on Diatom Biogeography in the Ocean
inferredcites →https://doi.org/10.1126/science.1205438openalex-snapshot
Detecting Novel Associations in Large Data Sets
inferredcites →https://doi.org/10.1126/science.1257594openalex-snapshot
Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes
inferredcites →https://doi.org/10.1126/science.1261359openalex-snapshot
Structure and function of the global ocean microbiome
inferredcites →https://doi.org/10.1126/science.1261605openalex-snapshot
Eukaryotic plankton diversity in the sunlit ocean
inferredcites →https://doi.org/10.1126/science.281.5374.237openalex-snapshot
Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.63.1.50-56.1997openalex-snapshot
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
inferredcites →https://doi.org/10.1128/mmbr.00002-17openalex-snapshot
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
inferredcites →https://doi.org/10.1128/mmbr.00051-12openalex-snapshot
Patterns and Processes of Microbial Community Assembly
inferredcites →https://doi.org/10.1146/annurev-marine-120710-100948openalex-snapshot
The Rare Bacterial Biosphere
inferredcites →https://doi.org/10.1146/annurev-micro-090110-102903openalex-snapshot
Eukaryotic Picoplankton in Surface Oceans
inferredcites →https://doi.org/10.1186/1471-2148-7-162openalex-snapshot
DNA evidence for global dispersal and probable endemicity of protozoa
inferredcites →https://doi.org/10.1186/1471-2164-14-s1-s7openalex-snapshot
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
inferredcites →https://doi.org/10.1371/journal.pbio.1001177openalex-snapshot
A Holistic Approach to Marine Eco-Systems Biology
inferredcites →https://doi.org/10.1371/journal.pcbi.1002687openalex-snapshot
Inferring Correlation Networks from Genomic Survey Data
inferredcites →https://doi.org/10.1371/journal.pone.0010037openalex-snapshot
Phytoplankton Biogeography and Community Stability in the Ocean
inferredcites →https://doi.org/10.1371/journal.pone.0151699openalex-snapshot
Phytoplankton across Tropical and Subtropical Regions of the Atlantic, Indian and Pacific Oceans
inferredcites →https://doi.org/10.1890/es11-00323.1openalex-snapshot
Diet choice of a predator in the wild: overabundance of prey and missed opportunities along the prey capture sequence
inferredcites →https://doi.org/10.2307/3071998openalex-snapshot
The Unified Neutral Theory of Biodiversity and Biogeography
inferredcites →https://doi.org/10.32614/cran.package.adespatialopenalex-snapshot
adespatial: Multivariate Multiscale Spatial Analysis
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3354/ame018275openalex-snapshot
Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean
inferredcites →https://doi.org/10.3389/fmicb.2016.00214openalex-snapshot
Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
inferredcites →https://doi.org/10.3389/fmicb.2016.00590openalex-snapshot
Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship
inferredcites →https://doi.org/10.3389/fmicb.2016.01949openalex-snapshot
Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism
inferredcites →https://doi.org/10.3389/fmicb.2018.01474openalex-snapshot
Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
inferredcites →https://doi.org/10.4319/lo.1994.39.1.0169openalex-snapshot
Primary production of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: Measurements from flow cytometric sorting
inferredcites →https://doi.org/10.4319/lo.2004.49.4.1022openalex-snapshot
Distribution of eukaryotic picoplankton assemblages across hydrographic fronts in the Southern Ocean, studied by denaturing gradient gel electrophoresis
inferredcites →https://doi.org/10.4319/lo.2007.52.5.2205openalex-snapshot
Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean
inferredcites →https://doi.org/10.5281/zenodo.259579openalex-snapshot
ramalok/amplicon_processing: Workflow for Analysing MiSeq Amplicons based on Uparse
inferredcites →https://doi.org/10.7554/elife.46497openalex-snapshot
Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
inferredcites →https://doi.org/10.7717/peerj.4320openalex-snapshot
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41396-019-0506-9openalex-snapshot
Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean
inferred← citeshttps://doi.org/10.1038/s41396-020-0723-2openalex-snapshot
Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system
inferred← citeshttps://doi.org/10.1038/s42003-024-05946-8openalex-snapshot
Biogeographic gradients of picoplankton diversity indicate increasing dominance of prokaryotes in warmer Arctic fjords
inferred← citeshttps://doi.org/10.1101/2020.01.21.914234openalex-snapshot
Environmental heterogeneity ruling the action of ecological processes over the bacterial metacommunity assembly
inferred← citeshttps://doi.org/10.1111/1462-2920.14992openalex-snapshot
Factors shaping community patterns of protists and bacteria on a European scale
inferred← citeshttps://doi.org/10.1111/1755-0998.13322openalex-snapshot
The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms
inferred← citeshttps://doi.org/10.1111/mec.15026openalex-snapshot
Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean
inferred← citeshttps://doi.org/10.1111/mec.15600openalex-snapshot
Community assembly of bacteria and archaea in coastal waters governed by contrasting mechanisms: A seasonal perspective
inferred← citeshttps://doi.org/10.3389/fmars.2022.865081openalex-snapshot
The Spatial Variation in Chlorophyte Community Composition From Coastal to Offshore Waters in a Subtropical Continental Shelf System
inferred← citeshttps://doi.org/10.3390/f14071341openalex-snapshot
Mixed Plantations Improve Soil Bacterial Similarity by Reducing Heterogeneous Environmental Selection
inferred← citeshttps://doi.org/10.3390/microorganisms8101484openalex-snapshot
Seasonality in Spatial Turnover of Bacterioplankton Along an Ecological Gradient in the East China Sea: Biogeographic Patterns, Processes and Drivers
inferred← citeshttps://doi.org/10.70675/cbaa029bz2850z4b26z97e7z7c1db113c35bopenalex-snapshot
Structure and trophic diversity of picoeukaryotic primary producers across the global ocean
inferred← citeshttps://doi.org/10.7287/peerj.12835v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Sargasso Sea bacterioplankton community structure and drivers of variance as revealed by DNA metabarcoding analysis (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12835v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Sargasso Sea bacterioplankton community structure and drivers of variance as revealed by DNA metabarcoding analysis (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.12835openalex-snapshot
Sargasso Sea bacterioplankton community structure and drivers of variance as revealed by DNA metabarcoding analysis
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