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Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

https://doi.org/10.1101/378950
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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In Vivo Electroporation of Developing Mouse Retina
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Cell proliferation during postnatal development of the retina in the mouse
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Lineage-independent determination of cell type in the embryonic mouse retina
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inferredcites →https://doi.org/10.1016/j.cell.2016.07.054openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.devcel.2017.10.029openalex-snapshot
Molecular Anatomy of the Developing Human Retina
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inferredcites →https://doi.org/10.1016/j.neuron.2008.08.008openalex-snapshot
Ikaros Confers Early Temporal Competence to Mouse Retinal Progenitor Cells
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inferredcites →https://doi.org/10.1016/j.neuron.2012.06.033openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.neuron.2014.12.052openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.neuron.2017.04.022openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.ydbio.2011.04.002openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.ydbio.2012.03.006openalex-snapshot
Math5 defines the ganglion cell competence state in a subpopulation of retinal progenitor cells exiting the cell cycle
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Comprehensive Analysis of Photoreceptor Gene Expression and the Identification of Candidate Retinal Disease Genes
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inferredcites →https://doi.org/10.1038/nrn3767openalex-snapshot
Intrinsically different retinal progenitor cells produce specific types of progeny
inferredcites →https://doi.org/10.1038/nrn4021openalex-snapshot
Proliferation control in neural stem and progenitor cells
inferredcites →https://doi.org/10.1038/srep32757openalex-snapshot
Multiple intrinsic factors act in concert with Lhx2 to direct retinal gliogenesis
inferredcites →https://doi.org/10.1073/pnas.0608155103openalex-snapshot
Notch activity permits retinal cells to progress through multiple progenitor states and acquire a stem cell property
inferredcites →https://doi.org/10.1073/pnas.1203138109openalex-snapshot
Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates
inferredcites →https://doi.org/10.1074/jbc.m113.478503openalex-snapshot
Transcription Factors SOX4 and SOX11 Function Redundantly to Regulate the Development of Mouse Retinal Ganglion Cells
inferredcites →https://doi.org/10.1089/zeb.2015.1184openalex-snapshot
Expression Profiling of Developing Zebrafish Retinal Cells
inferredcites →https://doi.org/10.1093/bioinformatics/btq503openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btx058openalex-snapshot
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inferredcites →https://doi.org/10.1093/cercor/bhu253openalex-snapshot
NFIX Regulates Proliferation and Migration Within the Murine SVZ Neurogenic Niche
inferredcites →https://doi.org/10.1101/191056openalex-snapshot
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inferredcites →https://doi.org/10.1101/196915openalex-snapshot
Enter the matrix: factorization uncovers knowledge from omics Names/Affiliations
inferredcites →https://doi.org/10.1101/cshperspect.a008359openalex-snapshot
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inferredcites →https://doi.org/10.1101/gad.216804.113openalex-snapshot
Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence
inferredcites →https://doi.org/10.1109/cibcb.2012.6217256openalex-snapshot
Matrix factorization for transcriptional regulatory network inference
inferredcites →https://doi.org/10.1111/j.1467-9868.2010.00749.xopenalex-snapshot
Fast Stable Restricted Maximum Likelihood and Marginal Likelihood Estimation of Semiparametric Generalized Linear Models
inferredcites →https://doi.org/10.1126/science.aap8809openalex-snapshot
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inferredcites →https://doi.org/10.1146/annurev-cellbio-101011-155801openalex-snapshot
The Cell Biology of Neurogenesis: Toward an Understanding of the Development and Evolution of the Neocortex
inferredcites →https://doi.org/10.1186/1471-213x-8-52openalex-snapshot
The transcription factor Nfixis essential for normal brain development
inferredcites →https://doi.org/10.1186/1749-8104-8-3openalex-snapshot
Neurogenesis in zebrafish – from embryo to adult
inferredcites →https://doi.org/10.1186/s13073-018-0545-2openalex-snapshot
Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance
inferredcites →https://doi.org/10.1242/dev.01560openalex-snapshot
Dlx1andDlx2function is necessary for terminal differentiation and survival of late-born retinal ganglion cells in the developing mouse retina
inferredcites →https://doi.org/10.1242/dev.043968openalex-snapshot
Blimp1 controls photoreceptor versus bipolar cell fate choice during retinal development
inferredcites →https://doi.org/10.1242/dev.059683openalex-snapshot
Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions
inferredcites →https://doi.org/10.1242/dev.064006openalex-snapshot
Ascl1 expression defines a subpopulation of lineage-restricted progenitors in the mammalian retina
inferredcites →https://doi.org/10.1371/journal.pbio.0020247openalex-snapshot
Genomic Analysis of Mouse Retinal Development
inferredcites →https://doi.org/10.1371/journal.pone.0001588openalex-snapshot
Individual Retinal Progenitor Cells Display Extensive Heterogeneity of Gene Expression
inferredcites →https://doi.org/10.1371/journal.pone.0022817openalex-snapshot
Genome-Wide Analysis of Müller Glial Differentiation Reveals a Requirement for Notch Signaling in Postmitotic Cells to Maintain the Glial Fate
inferredcites →https://doi.org/10.1371/journal.pone.0092105openalex-snapshot
Isl1 and Pou4f2 Form a Complex to Regulate Target Genes in Developing Retinal Ganglion Cells
inferredcites →https://doi.org/10.1523/jneurosci.0321-13.2013openalex-snapshot
The miR-223/Nuclear Factor I-A Axis Regulates Glial Precursor Proliferation and Tumorigenesis in the CNS
inferredcites →https://doi.org/10.1523/jneurosci.0771-10.2010openalex-snapshot
Blimp1 Suppresses Chx10 Expression in Differentiating Retinal Photoreceptor Precursors to Ensure Proper Photoreceptor Development
inferredcites →https://doi.org/10.1523/jneurosci.2073-12.2012openalex-snapshot
Biasing Amacrine Subtypes in the Atoh7 Lineage through Expression of Barhl2
inferredcites →https://doi.org/10.1523/jneurosci.3145-15.2016openalex-snapshot
Lhx2 Is an Essential Factor for Retinal Gliogenesis and Notch Signaling
inferredcites →https://doi.org/10.32614/rj-2016-021openalex-snapshot
mclust 5: Clustering, Classification and Density Estimation Using Gaussian Finite Mixture Models
inferredcites →https://doi.org/10.4137/cin.s14066openalex-snapshot
Learning Dysregulated Pathways in Cancers from Differential Variability Analysis
inferredcites →https://doi.org/10.48550/arxiv.1802.03426openalex-snapshot
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cels.2019.04.004openalex-snapshot
Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species
inferred← citeshttps://doi.org/10.1038/s41467-019-14020-5openalex-snapshot
ASCOT identifies key regulators of neuronal subtype-specific splicing
inferred← citeshttps://doi.org/10.1038/s41587-021-00870-2openalex-snapshot
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
inferred← citeshttps://doi.org/10.1038/s41598-019-51703-xopenalex-snapshot
Let-7 regulates cell cycle dynamics in the developing cerebral cortex and retina
inferred← citeshttps://doi.org/10.1038/s41598-021-83395-7openalex-snapshot
A Casz1–NuRD complex regulates temporal identity transitions in neural progenitors
inferred← citeshttps://doi.org/10.1096/fj.201801832rropenalex-snapshot
The circadian clock gene Bmal1 is required to control the timing of retinal neurogenesis and lamination of Müller glia in the mouse retina
inferred← citeshttps://doi.org/10.1101/479287openalex-snapshot
Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data
inferred← citeshttps://doi.org/10.1101/538710openalex-snapshot
Single cell profiling of CRISPR/Cas9-induced OTX2 deficient retinas reveals fate switch from restricted progenitors
inferred← citeshttps://doi.org/10.1101/573782openalex-snapshot
Sequential compression of gene expression across dimensionalities and methods reveals no single best method or dimensionality
inferred← citeshttps://doi.org/10.1101/614149openalex-snapshot
Single cell RNA sequencing reveals cellular diversity of trisomy 21 retina
inferred← citeshttps://doi.org/10.1101/617555openalex-snapshot
Single cell RNA-seq reveals cellular diversity and developmental characteristics of human infant retina
inferred← citeshttps://doi.org/10.1103/physrevresearch.3.023212openalex-snapshot
Entanglement clustering for ground-stateable quantum many-body states
inferred← citeshttps://doi.org/10.1158/0008-5472.can-18-3882openalex-snapshot
Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data
inferred← citeshttps://doi.org/10.1167/iovs.19-26951openalex-snapshot
Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors
inferred← citeshttps://doi.org/10.1186/s13059-020-02021-3openalex-snapshot
Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
inferred← citeshttps://doi.org/10.1242/dev.178103openalex-snapshot
Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons
inferred← citeshttps://doi.org/10.1371/journal.pone.0308839openalex-snapshot
Six3 and Six6 jointly control diverse target genes in multiple cell populations over developmental trajectories of mouse embryonic retinal progenitor cells
inferred← citeshttps://doi.org/10.48550/arxiv.1802.03426openalex-snapshot
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
inferred← citeshttps://doi.org/10.70675/03f0bf21z8b4az4f15z9a7bz36e850e62608openalex-snapshot
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