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Multiscale analysis of structurally conserved motifs

https://doi.org/10.1101/379768
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/pro.5560070226openalex-snapshot
Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins
inferredcites →https://doi.org/10.1002/prot.24172openalex-snapshot
CAD‐score: A new contact area difference‐based function for evaluation of protein structural models
inferredcites →https://doi.org/10.1002/prot.25658openalex-snapshot
Characterizing molecular flexibility by combining least root mean square deviation measures
inferredcites →https://doi.org/10.1006/jmbi.1993.1489openalex-snapshot
Protein Structure Comparison by Alignment of Distance Matrices
inferredcites →https://doi.org/10.1007/978-3-642-13193-6_10openalex-snapshot
Maximum Cliques in Protein Structure Comparison
inferredcites →https://doi.org/10.1007/bf02574053openalex-snapshot
The union of balls and its dual shape
inferredcites →https://doi.org/10.1007/s00454-006-1276-5openalex-snapshot
Stability of Persistence Diagrams
inferredcites →https://doi.org/10.1016/j.jmb.2003.10.025openalex-snapshot
On the Role of Structural Information in Remote Homology Detection and Sequence Alignment: New Methods Using Hybrid Sequence Profiles
inferredcites →https://doi.org/10.1016/j.sbi.2009.04.003openalex-snapshot
Advances and pitfalls of protein structural alignment
inferredcites →https://doi.org/10.1016/s0166-218x(96)00054-6openalex-snapshot
Triangulating the surface of a molecule
inferredcites →https://doi.org/10.1016/s0968-0004(00)89105-7openalex-snapshot
Dali: a network tool for protein structure comparison
inferredcites →https://doi.org/10.1021/cr040426mopenalex-snapshot
Molecular Dynamics: Survey of Methods for Simulating the Activity of Proteins
inferredcites →https://doi.org/10.1038/375291a0openalex-snapshot
The envelope glycoprotein from tick-borne encephalitis virus at 2 Å resolution
inferredcites →https://doi.org/10.1038/sj.emboj.7600064openalex-snapshot
Structure of a flavivirus envelope glycoprotein in its low‐pH‐induced membrane fusion conformation
inferredcites →https://doi.org/10.1063/1.4893963openalex-snapshot
Diffusion maps, clustering and fuzzy Markov modeling in peptide folding transitions
inferredcites →https://doi.org/10.1073/pnas.0404383101openalex-snapshot
Approximate protein structural alignment in polynomial time
inferredcites →https://doi.org/10.1073/pnas.1635048100openalex-snapshot
Matching protein structures with fuzzy alignments
inferredcites →https://doi.org/10.1089/cmb.2009.0196openalex-snapshot
Maximum Contact Map Overlap Revisited
inferredcites →https://doi.org/10.1089/cmb.2010.0102openalex-snapshot
Consistency Properties of Species Tree Inference by Minimizing Deep Coalescences
inferredcites →https://doi.org/10.1090/mbk/069openalex-snapshot
Computational Topology
inferredcites →https://doi.org/10.1093/bioinformatics/10.6.587openalex-snapshot
Flexible algorithm for direct multiple alignment of protein structures and sequences
inferredcites →https://doi.org/10.1093/bioinformatics/7.1.1openalex-snapshot
Fast optimal alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btg1086openalex-snapshot
Flexible structure alignment by chaining aligned fragment pairs allowing twists
inferredcites →https://doi.org/10.1093/bioinformatics/btn271openalex-snapshot
Protein structure alignment considering phenotypic plasticity
inferredcites →https://doi.org/10.1093/bioinformatics/bts618openalex-snapshot
Fast protein structure alignment using Gaussian overlap scoring of backbone peptide fragment similarity
inferredcites →https://doi.org/10.1093/bioinformatics/btw752openalex-snapshot
The structural bioinformatics library: modeling in biomolecular science and beyond
inferredcites →https://doi.org/10.1093/nar/gkg571openalex-snapshot
LGA: a method for finding 3D similarities in protein structures
inferredcites →https://doi.org/10.1093/nar/gkl809openalex-snapshot
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
inferredcites →https://doi.org/10.1093/nar/gks362openalex-snapshot
CSA: comprehensive comparison of pairwise protein structure alignments
inferredcites →https://doi.org/10.1101/379800openalex-snapshot
Hybrid sequence-structure based HMM models leverage the identification of homologous proteins: the example of class II fusion proteins
inferredcites →https://doi.org/10.1107/97809553602060000885openalex-snapshot
Protein geometry: volumes, areas and distances
inferredcites →https://doi.org/10.1109/sffcs.1999.814624openalex-snapshot
Algorithmic aspects of protein structure similarity
inferredcites →https://doi.org/10.1145/2049662.2049663openalex-snapshot
The university of Florida sparse matrix collection
inferredcites →https://doi.org/10.1145/2049662.2049665openalex-snapshot
Computing the volume of a union of balls
inferredcites →https://doi.org/10.1145/306198.306210openalex-snapshot
How to find the best approximation results
inferredcites →https://doi.org/10.1145/3345951openalex-snapshot
Comparing Two Clusterings Using Matchings between Clusters of Clusters
inferredcites →https://doi.org/10.1146/annurev-virology-031413-085521openalex-snapshot
Mechanisms of Virus Membrane Fusion Proteins
inferredcites →https://doi.org/10.1146/annurev.bb.06.060177.001055openalex-snapshot
AREAS, VOLUMES, PACKING, AND PROTEIN STRUCTURE
inferredcites →https://doi.org/10.1186/1472-6807-7-50openalex-snapshot
Comparative Analysis of Protein Structure Alignments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/prot.25658openalex-snapshot
Characterizing molecular flexibility by combining least root mean square deviation measures
inferred← citeshttps://doi.org/10.1101/379800openalex-snapshot
Hybrid sequence-structure based HMM models leverage the identification of homologous proteins: the example of class II fusion proteins
inferred← citeshttps://doi.org/10.1145/3345951openalex-snapshot
Comparing Two Clusterings Using Matchings between Clusters of Clusters
inferred← citeshttps://doi.org/10.70675/4fb1ffd2z8125z4a03z99b0za6b6608a5a76openalex-snapshot
Mixed sequence-structure based analysis of proteins, with applications to functional annotations
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