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RNAlater and flash freezing storage methods nonrandomly influence observed gene expression in RNAseq experiments

https://doi.org/10.1101/379834
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.jviromet.2017.11.004openalex-snapshot
RNAlater ® is a viable storage option for avian influenza sampling in logistically challenging conditions
inferredcites →https://doi.org/10.1038/modpathol.3880267openalex-snapshot
Preservation of RNA for Functional Genomic Studies: A Multidisciplinary Tumor Bank Protocol
inferredcites →https://doi.org/10.1038/nbt.3122openalex-snapshot
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
inferredcites →https://doi.org/10.1038/ncomms6307openalex-snapshot
The cavefish genome reveals candidate genes for eye loss
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nprot.2016.095openalex-snapshot
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
inferredcites →https://doi.org/10.1038/nrg2398openalex-snapshot
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
inferredcites →https://doi.org/10.1038/nrg3229openalex-snapshot
Comparative studies of gene expression and the evolution of gene regulation
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/nar/gkw1138openalex-snapshot
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
inferredcites →https://doi.org/10.1101/263517openalex-snapshot
GTFtools: a Python package for analyzing various modes of gene models
inferredcites →https://doi.org/10.1101/gr.079558.108openalex-snapshot
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
inferredcites →https://doi.org/10.1111/1755-0998.12003openalex-snapshot
The simple fool's guide to population genomics via RNA ‐Seq: an introduction to high‐throughput sequencing data analysis
inferredcites →https://doi.org/10.1111/1755-0998.12108openalex-snapshot
Preservation of RNA and DNA from mammal samples under field conditions
inferredcites →https://doi.org/10.1111/1755-0998.12109openalex-snapshot
Principles of transcriptome analysis and gene expression quantification: an RNA ‐seq tutorial
inferredcites →https://doi.org/10.1111/1755-0998.12485openalex-snapshot
Evaluation of the impact of RNA preservation methods of spiders forde novotranscriptome assembly
inferredcites →https://doi.org/10.1111/mec.13055openalex-snapshot
Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?
inferredcites →https://doi.org/10.1111/mec.13526openalex-snapshot
The power and promise of RNA ‐seq in ecology and evolution
inferredcites →https://doi.org/10.1186/1471-2105-10-48openalex-snapshot
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
inferredcites →https://doi.org/10.1186/1471-2164-12-293openalex-snapshot
RNA-seq: technical variability and sampling
inferredcites →https://doi.org/10.1186/1471-2164-5-88openalex-snapshot
Comparison of frozen and RNALater solid tissue storage methods for use in RNA expression microarrays
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pgen.1003457openalex-snapshot
Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap
inferredcites →https://doi.org/10.1371/journal.pone.0019556openalex-snapshot
Technical Variability Is Greater than Biological Variability in a Microarray Experiment but Both Are Outweighed by Changes Induced by Stimulation
inferredcites →https://doi.org/10.1371/journal.pone.0167391openalex-snapshot
Preservation of Multiple Mammalian Tissues to Maximize Science Return from Ground Based and Spaceflight Experiments
inferredcites →https://doi.org/10.1371/journal.pone.0171529openalex-snapshot
Stress indicator gene expression profiles, colony dynamics and tissue development of honey bees exposed to sub-lethal doses of imidacloprid in laboratory and field experiments
inferredcites →https://doi.org/10.1371/journal.pone.0175943openalex-snapshot
Transcriptome and proteome responses in RNAlater preserved tissue of Arabidopsis thaliana
inferredcites →https://doi.org/10.1515/cclm.2007.281openalex-snapshot
Preservation of RNA for functional analysis of separated alleles in yeast: comparison of snap-frozen and RNALater® solid tissue storage methods
inferredcites →https://doi.org/10.1525/cond.2011.100201openalex-snapshot
Effects of Postmortem Interval and Preservation Method on RNA Isolated from Field-Preserved Avian Tissues
inferredcites →https://doi.org/10.2165/00822942-200504010-00004openalex-snapshot
Replication, Variation and Normalisation in Microarray Experiments
inferredcites →https://doi.org/10.2353/jmoldx.2006.050056openalex-snapshot
Prognostic Gene Expression Signatures Can Be Measured in Tissues Collected in RNAlater Preservative

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s12223-018-0658-4openalex-snapshot
Methods for quantification of growth and productivity in anaerobic microbiology and biotechnology
inferred← citeshttps://doi.org/10.1128/jvi.01342-18openalex-snapshot
Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes
inferred← citeshttps://doi.org/10.1128/spectrum.01877-21openalex-snapshot
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes
inferred← citeshttps://doi.org/10.1186/s12864-021-07381-zopenalex-snapshot
Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing
inferred← citeshttps://doi.org/10.1186/s13007-024-01311-2openalex-snapshot
Development of an infiltration-based RNA preservation method for cryogen-free storage of leaves for gene expression analyses in field-grown plants
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009642openalex-snapshot
Repeated evolution of circadian clock dysregulation in cavefish populations
inferred← citeshttps://doi.org/10.15829/1728-8800-2021-3105openalex-snapshot
Optimization of RNA storage in a biobank, as well as methods for manual and automated isolation of RNA from whole blood and leukocyte fraction
inferred← citeshttps://doi.org/10.2478/rrlm-2020-0024openalex-snapshot
Comparative Evaluation of RNAlater Solution and Snap Frozen Methods for Gene Expression Studies in Different Tissues
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