On the public citation graph

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

https://doi.org/10.1101/381145
0 signed · 44 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/wsbm.64openalex-snapshot
DNA methylation and gene expression
inferredcites →https://doi.org/10.1016/0168-9525(94)90228-3openalex-snapshot
Role for DNA methylation in genomic imprinting
inferredcites →https://doi.org/10.1016/j.cell.2016.09.006openalex-snapshot
Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing
inferredcites →https://doi.org/10.1016/j.molcel.2009.11.017openalex-snapshot
Evidence that Fold-Change, and Not Absolute Level, of β-Catenin Dictates Wnt Signaling
inferredcites →https://doi.org/10.1016/j.spl.2008.01.023openalex-snapshot
Limiting distribution of the G statistics
inferredcites →https://doi.org/10.1016/j.tibs.2005.12.008openalex-snapshot
Genomic DNA methylation: the mark and its mediators
inferredcites →https://doi.org/10.1038/366362a0openalex-snapshot
Role for DNA methylation in genomic imprinting
inferredcites →https://doi.org/10.1038/83730openalex-snapshot
Loss of genomic methylation causes p53-dependent apoptosis and epigenetic deregulation
inferredcites →https://doi.org/10.1038/nature14192openalex-snapshot
Function and information content of DNA methylation
inferredcites →https://doi.org/10.1038/nbt.2931openalex-snapshot
Normalization of RNA-seq data using factor analysis of control genes or samples
inferredcites →https://doi.org/10.1038/ng1089openalex-snapshot
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
inferredcites →https://doi.org/10.1038/nrg3230openalex-snapshot
Functions of DNA methylation: islands, start sites, gene bodies and beyond
inferredcites →https://doi.org/10.1038/s41562-016-0021openalex-snapshot
A manifesto for reproducible science
inferredcites →https://doi.org/10.1073/pnas.1415301111openalex-snapshot
Notes on the role of dynamic DNA methylation in mammalian development
inferredcites →https://doi.org/10.1093/bioinformatics/btm254openalex-snapshot
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/bioinformatics/btw026openalex-snapshot
Differential methylation analysis for BS-seq data under general experimental design
inferredcites →https://doi.org/10.1093/bioinformatics/btx183openalex-snapshot
annotatr: genomic regions in context
inferredcites →https://doi.org/10.1093/biostatistics/kxy007openalex-snapshot
Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing
inferredcites →https://doi.org/10.1093/nar/gkq1019openalex-snapshot
The Sequence Read Archive
inferredcites →https://doi.org/10.1101/170506openalex-snapshot
Frequent lack of repressive capacity of promoter DNA methylation identified through genome-wide epigenomic manipulation
inferredcites →https://doi.org/10.1126/science.aab2956openalex-snapshot
Dynamics of epigenetic regulation at the single-cell level
inferredcites →https://doi.org/10.1128/mr.55.3.451-458.1991openalex-snapshot
DNA methylation and gene expression
inferredcites →https://doi.org/10.1186/gb-2012-13-10-r83openalex-snapshot
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13072-015-0002-zopenalex-snapshot
Targeted epigenome editing of an endogenous locus with chromatin modifiers is not stably maintained
inferredcites →https://doi.org/10.1371/journal.pcbi.1003118openalex-snapshot
Software for Computing and Annotating Genomic Ranges
inferredcites →https://doi.org/10.1371/journal.pcbi.1003381openalex-snapshot
Extrapolating Weak Selection in Evolutionary Games
inferredcites →https://doi.org/10.1371/journal.pgen.1002604openalex-snapshot
Gene Reactivation by 5-Aza-2′-Deoxycytidine–Induced Demethylation Requires SRCAP–Mediated H2A.Z Insertion to Establish Nucleosome Depleted Regions
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41398-019-0437-2openalex-snapshot
Leveraging brain cortex-derived molecular data to elucidate epigenetic and transcriptomic drivers of complex traits and disease
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz436openalex-snapshot
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
inferred← citeshttps://doi.org/10.1093/nar/gkz1127openalex-snapshot
SIRT1/2 orchestrate acquisition of DNA methylation and loss of histone H3 activating marks to prevent premature activation of inflammatory genes in macrophages
inferred← citeshttps://doi.org/10.1101/2020.03.14.20036061openalex-snapshot
Epigenomics and Transcriptomics of Systemic Sclerosis CD4+ T cells reveal Long Range Dysregulation of Key Inflammatory Pathways mediated by disease-associated Susceptibility Loci
inferred← citeshttps://doi.org/10.1101/2020.07.04.187880openalex-snapshot
Natural selection acts on epigenetic marks
inferred← citeshttps://doi.org/10.1101/2021.11.25.469994openalex-snapshot
Evidence of positive and negative selection associated with DNA methylation
inferred← citeshttps://doi.org/10.1101/784231openalex-snapshot
The role of genomic vs. epigenomic variation in shaping patterns of convergent transcriptomic variation across continents in a young species complex
inferred← citeshttps://doi.org/10.1126/science.aat6806openalex-snapshot
Dynamic DNA methylation: In the right place at the right time
inferred← citeshttps://doi.org/10.1172/jci.insight.158783openalex-snapshot
The synovial and blood monocyte DNA methylomes mirror prognosis, evolution, and treatment in early arthritis
inferred← citeshttps://doi.org/10.1186/s13059-022-02728-5openalex-snapshot
Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability
inferred← citeshttps://doi.org/10.1186/s13073-020-00779-6openalex-snapshot
Epigenomics and transcriptomics of systemic sclerosis CD4+ T cells reveal long-range dysregulation of key inflammatory pathways mediated by disease-associated susceptibility loci
inferred← citeshttps://doi.org/10.20870/productions-animales.2018.31.4.2372openalex-snapshot
Apports du séquençage haut-débit sur la connaissance de l'épigénome aviaire
inferred← citeshttps://doi.org/10.3390/genes11010110openalex-snapshot
Understanding the Relevance of DNA Methylation Changes in Immune Differentiation and Disease
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.