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Evaluating the quality of the 1000 Genomes Project data

https://doi.org/10.1101/383950
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gepi.20533openalex-snapshot
MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
inferredcites →https://doi.org/10.1016/j.ajhg.2009.01.005openalex-snapshot
A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals
inferredcites →https://doi.org/10.1016/j.ajhg.2009.01.013openalex-snapshot
Genotype-Imputation Accuracy across Worldwide Human Populations
inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot
A map of human genome variation from population-scale sequencing
inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot
An integrated map of genetic variation from 1,092 human genomes
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
inferredcites →https://doi.org/10.1038/nbt.3432openalex-snapshot
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
inferredcites →https://doi.org/10.1038/ng.120openalex-snapshot
Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes
inferredcites →https://doi.org/10.1038/ng.3571openalex-snapshot
Fast and accurate long-range phasing in a UK Biobank cohort
inferredcites →https://doi.org/10.1038/ng.3643openalex-snapshot
A reference panel of 64,976 haplotypes for genotype imputation
inferredcites →https://doi.org/10.1038/ng.3679openalex-snapshot
Reference-based phasing using the Haplotype Reference Consortium panel
inferredcites →https://doi.org/10.1038/ng2088openalex-snapshot
A new multipoint method for genome-wide association studies by imputation of genotypes
inferredcites →https://doi.org/10.1038/nmeth.1785openalex-snapshot
A linear complexity phasing method for thousands of genomes
inferredcites →https://doi.org/10.1038/nrg2796openalex-snapshot
Genotype imputation for genome-wide association studies
inferredcites →https://doi.org/10.1038/nrg2950openalex-snapshot
The importance of phase information for human genomics
inferredcites →https://doi.org/10.1038/nrg3054openalex-snapshot
Haplotype phasing: existing methods and new developments
inferredcites →https://doi.org/10.1038/nrg3903openalex-snapshot
Haplotype-resolved genome sequencing: experimental methods and applications
inferredcites →https://doi.org/10.1086/323612openalex-snapshot
Gene Conversion and Different Population Histories May Explain the Contrast between Polymorphism and Linkage Disequilibrium Levels
inferredcites →https://doi.org/10.1086/379378openalex-snapshot
A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data
inferredcites →https://doi.org/10.1086/428594openalex-snapshot
Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation
inferredcites →https://doi.org/10.1086/500808openalex-snapshot
A Comparison of Phasing Algorithms for Trios and Unrelated Individuals
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1086/503876openalex-snapshot
Multilocus Association Mapping Using Variable-Length Markov Chains
inferredcites →https://doi.org/10.1086/521987openalex-snapshot
Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1101/gr.214874.116openalex-snapshot
Direct determination of diploid genome sequences
inferredcites →https://doi.org/10.1126/science.1069424openalex-snapshot
The Structure of Haplotype Blocks in the Human Genome
inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164242openalex-snapshot
Genotype Imputation
inferredcites →https://doi.org/10.1186/1471-2105-9-540openalex-snapshot
Shape-IT: new rapid and accurate algorithm for haplotype inference
inferredcites →https://doi.org/10.1371/journal.pgen.1000477openalex-snapshot
Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip
inferredcites →https://doi.org/10.1371/journal.pgen.1000529openalex-snapshot
A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jmoldx.2018.12.004openalex-snapshot
A New Fast Phasing Method Based On Haplotype Subtraction
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000586openalex-snapshot
Dating genomic variants and shared ancestry in population-scale sequencing data
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