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Keystone mutualists can facilitate transition between alternative ecosystem states in the soil

https://doi.org/10.1101/392993
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Species associations overwhelm abiotic conditions to dictate the structure and function of wood‐decay fungal communities
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Ecosystem Consequences of Microbial Diversity and Community Structure
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Primary Productivity of the Biosphere
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Ectomycorrhizal, vesicular-arbuscular and dark septate fungal colonization of bishop pine ( Pinus muricata ) seedlings in the first 5 months of growth after wildfire
inferredcites →https://doi.org/10.1007/s11104-008-9814-yopenalex-snapshot
Plant-driven selection of microbes
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Alternative stable states and regional community structure
inferredcites →https://doi.org/10.1016/j.soilbio.2015.02.011openalex-snapshot
Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees
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Rooting theories of plant community ecology in microbial interactions
inferredcites →https://doi.org/10.1016/s0169-5347(00)89047-3openalex-snapshot
The keystone cops meet in Hilo
inferredcites →https://doi.org/10.1017/s0266467403003468openalex-snapshot
Monodominance in the ectomycorrhizal Dicymbe corymbosa (Caesalpiniaceae) from Guyana
inferredcites →https://doi.org/10.1038/ismej.2013.253openalex-snapshot
Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest
inferredcites →https://doi.org/10.1038/ismej.2013.66openalex-snapshot
Strong coupling of plant and fungal community structure across western Amazonian rainforests
inferredcites →https://doi.org/10.1038/ismej.2014.17openalex-snapshot
Taxonomical and functional microbial community selection in soybean rhizosphere
inferredcites →https://doi.org/10.1038/nature07028openalex-snapshot
A unifying framework for dinitrogen fixation in the terrestrial biosphere
inferredcites →https://doi.org/10.1038/nature12525openalex-snapshot
Key role of symbiotic dinitrogen fixation in tropical forest secondary succession
inferredcites →https://doi.org/10.1038/nature12901openalex-snapshot
Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage
inferredcites →https://doi.org/10.1038/nature12911openalex-snapshot
Pathogens and insect herbivores drive rainforest plant diversity and composition
inferredcites →https://doi.org/10.1038/nclimate2251openalex-snapshot
Climate fails to predict wood decomposition at regional scales
inferredcites →https://doi.org/10.1038/s41396-018-0086-0openalex-snapshot
Competition–colonization tradeoffs structure fungal diversity
inferredcites →https://doi.org/10.1038/s41477-018-0139-4openalex-snapshot
Core microbiomes for sustainable agroecosystems
inferredcites →https://doi.org/10.1038/s41559-018-0559-6openalex-snapshot
Legume abundance along successional and rainfall gradients in Neotropical forests
inferredcites →https://doi.org/10.1038/s41579-018-0024-1openalex-snapshot
Keystone taxa as drivers of microbiome structure and functioning
inferredcites →https://doi.org/10.1046/j.1442-9993.2001.01070.xopenalex-snapshot
A new method for non-parametric multivariate analysis of variance
inferredcites →https://doi.org/10.1046/j.1469-8137.2003.00794.xopenalex-snapshot
Root colonization dynamics of two ectomycorrhizal fungi of contrasting life history strategies are mediated by addition of organic nutrient patches
inferredcites →https://doi.org/10.1073/pnas.1323790111openalex-snapshot
LRP1 is a receptor for Clostridium perfringens TpeL toxin indicating a two-receptor model of clostridial glycosylating toxins
inferredcites →https://doi.org/10.1073/pnas.1704022114openalex-snapshot
Tree genetics defines fungal partner communities that may confer drought tolerance
inferredcites →https://doi.org/10.1073/pnas.1711842115openalex-snapshot
The biomass distribution on Earth
inferredcites →https://doi.org/10.1086/282586openalex-snapshot
A Note on Trophic Complexity and Community Stability
inferredcites →https://doi.org/10.1086/284105openalex-snapshot
On the Evidence Needed to Judge Ecological Stability or Persistence
inferredcites →https://doi.org/10.1086/318629openalex-snapshot
Causes and Consequences of Monodominance in Tropical Lowland Forests
inferredcites →https://doi.org/10.1086/668166openalex-snapshot
A Symbiotic View of Life: We Have Never Been Individuals
inferredcites →https://doi.org/10.1086/692439openalex-snapshot
Geographical Variation in Community Divergence: Insights from Tropical Forest Monodominance by Ectomycorrhizal Trees
inferredcites →https://doi.org/10.1093/bioinformatics/btu393openalex-snapshot
circlize implements and enhances circular visualization in R
inferredcites →https://doi.org/10.1098/rspb.2015.1001openalex-snapshot
Pervasive and strong effects of plants on soil chemistry: a meta-analysis of individual plant ‘Zinke’ effects
inferredcites →https://doi.org/10.1101/gr.128124.111openalex-snapshot
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
inferredcites →https://doi.org/10.1111/1365-2435.12668openalex-snapshot
The role of locally adapted mycorrhizas and rhizobacteria in plant–soil feedback systems
inferredcites →https://doi.org/10.1111/1365-2745.12915openalex-snapshot
Timing of mutualist arrival has a greater effect on Pinus muricata seedling growth than interspecific competition
inferredcites →https://doi.org/10.1111/1462-2920.14257openalex-snapshot
Keystone taxa predict compositional change in microbial communities
inferredcites →https://doi.org/10.1111/ele.12459openalex-snapshot
Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient
inferredcites →https://doi.org/10.1111/ele.12570openalex-snapshot
An ectomycorrhizal nitrogen economy facilitates monodominance in a neotropical forest
inferredcites →https://doi.org/10.1111/j.1365-2486.2008.01674.xopenalex-snapshot
Simple three‐pool model accurately describes patterns of long‐term litter decomposition in diverse climates
inferredcites →https://doi.org/10.1111/j.1365-2745.2005.00977.xopenalex-snapshot
Ectomycorrhizal fungal communities at forest edges
inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01219.xopenalex-snapshot
Plant species traits are the predominant control on litter decomposition rates within biomes worldwide
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03075.xopenalex-snapshot
Potential link between plant and fungal distributions in a dipterocarp rainforest: community and phylogenetic structure of tropical ectomycorrhizal fungi across a plant and soil ecotone
inferredcites →https://doi.org/10.1111/jvs.12073openalex-snapshot
Divergent successional pathways of stand development following fire in a C alifornia closed‐cone pine forest
inferredcites →https://doi.org/10.1111/mec.14414openalex-snapshot
Environmental filtering by pH and soil nutrients drives community assembly in fungi at fine spatial scales
inferredcites →https://doi.org/10.1111/mec.14576openalex-snapshot
Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure
inferredcites →https://doi.org/10.1111/nph.12221openalex-snapshot
The mycorrhizal‐associated nutrient economy: a new framework for predicting carbon–nutrient couplings in temperate forests
inferredcites →https://doi.org/10.1111/nph.13654openalex-snapshot
Scale‐dependent variation in nitrogen cycling and soil fungal communities along gradients of forest composition and age in regenerating tropical dry forests
inferredcites →https://doi.org/10.1126/science.1153213openalex-snapshot
The Microbial Engines That Drive Earth's Biogeochemical Cycles
inferredcites →https://doi.org/10.1126/science.1231923openalex-snapshot
Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest
inferredcites →https://doi.org/10.1126/science.277.5330.1302openalex-snapshot
The Effects of Plant Composition and Diversity on Ecosystem Processes
inferredcites →https://doi.org/10.1126/science.aai8212openalex-snapshot
Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/mbio.01371-14openalex-snapshot
Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145039openalex-snapshot
Microbially Mediated Plant Functional Traits
inferredcites →https://doi.org/10.1146/annurev-ecolsys-121415-032100openalex-snapshot
The Mutualistic Niche: Mycorrhizal Symbiosis and Community Dynamics
inferredcites →https://doi.org/10.1146/annurev.ecolsys.37.091305.110246openalex-snapshot
The Nitrogen Paradox in Tropical Forest Ecosystems
inferredcites →https://doi.org/10.1146/annurev.es.13.110182.001531openalex-snapshot
The Ecology of Mutualism
inferredcites →https://doi.org/10.1146/annurev.es.23.110192.000431openalex-snapshot
Biological Invasions by Exotic Grasses, the Grass/Fire Cycle, and Global Change
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s40168-018-0605-2openalex-snapshot
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
inferredcites →https://doi.org/10.1353/pbm.1998.0025openalex-snapshot
The Myth of Community as Organism
inferredcites →https://doi.org/10.1371/journal.pbio.2001793openalex-snapshot
Research priorities for harnessing plant microbiomes in sustainable agriculture
inferredcites →https://doi.org/10.1371/journal.pone.0025126openalex-snapshot
Colonization-Competition Tradeoffs as a Mechanism Driving Successional Dynamics in Ectomycorrhizal Fungal Communities
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0090234openalex-snapshot
Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1890/08-0296.1openalex-snapshot
Testing the functional significance of microbial community composition
inferredcites →https://doi.org/10.1890/10-0773.1openalex-snapshot
Soil microbes drive the classic plant diversity–productivity pattern
inferredcites →https://doi.org/10.1890/12-1243.1openalex-snapshot
Microbial abundance and composition influence litter decomposition response to environmental change
inferredcites →https://doi.org/10.1890/13-2124.1openalex-snapshot
Nitrogen fixation strategies can explain the latitudinal shift in nitrogen‐fixing tree abundance
inferredcites →https://doi.org/10.1890/14-1100.1openalex-snapshot
A single ectomycorrhizal fungal species can enable a Pinus invasion
inferredcites →https://doi.org/10.1890/15-0882.1openalex-snapshot
Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass
inferredcites →https://doi.org/10.2307/1942601openalex-snapshot
Biological Invasion by Myrica Faya in Hawai'i: Plant Demography, Nitrogen Fixation, Ecosystem Effects
inferredcites →https://doi.org/10.2307/2256278openalex-snapshot
Nature and Structure of the Climax
inferredcites →https://doi.org/10.2307/2479933openalex-snapshot
The Individualistic Concept of the Plant Association
inferredcites →https://doi.org/10.32614/cran.package.gdmopenalex-snapshot
gdm: Generalized Dissimilarity Modeling
inferredcites →https://doi.org/10.3852/14-293openalex-snapshot
Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
inferredcites →https://doi.org/10.4996/fireecology.0702114openalex-snapshot
Landscape-Scale Vegetation Change Following Fire in Point Reyes, California, USA
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.fbr.2020.07.004openalex-snapshot
The need to study the holobiome for gainful uses of endophytes
inferred← citeshttps://doi.org/10.3389/fpls.2019.00862openalex-snapshot
Plant Host-Associated Mechanisms for Microbial Selection
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