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Integrated modeling of peptide digestion and detection for the prediction of proteotypic peptides in targeted proteomics
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.jprot.2014.05.011openalex-snapshot
Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data
inferredcites →https://doi.org/10.1016/j.molonc.2014.03.006openalex-snapshot
Mass spectrometry based biomarker discovery, verification, and validation — Quality assurance and control of protein biomarker assays
inferredcites →https://doi.org/10.1016/j.patcog.2005.01.012openalex-snapshot
Score normalization in multimodal biometric systems
inferredcites →https://doi.org/10.1016/s0167-4838(97)00175-1openalex-snapshot
The structural aspects of limited proteolysis of native proteins
inferredcites →https://doi.org/10.1021/ac9914869openalex-snapshot
Relating Electrospray Ionization Response to Nonpolar Character of Small Peptides
inferredcites →https://doi.org/10.1021/acs.jproteome.6b00048openalex-snapshot
Analysis of Intrinsic Peptide Detectability via Integrated Label-Free and SRM-Based Absolute Quantitative Proteomics
inferredcites →https://doi.org/10.1021/pr049909xopenalex-snapshot
Definition and Characterization of a “Trypsinosome” from Specific Peptide Characteristics by Nano-HPLC−MS/MS and in Silico Analysis of Complex Protein Mixtures
inferredcites →https://doi.org/10.1021/pr050290oopenalex-snapshot
Strategy to Design Improved Proteomic Experiments Based on Statistical Analyses of the Chemical Properties of Identified Peptides
inferredcites →https://doi.org/10.1021/pr060507uopenalex-snapshot
Prediction of Missed Cleavage Sites in Tryptic Peptides Aids Protein Identification in Proteomics
inferredcites →https://doi.org/10.1021/pr4001114openalex-snapshot
Predicting Tryptic Cleavage from Proteomics Data Using Decision Tree Ensembles
inferredcites →https://doi.org/10.1038/nature13319openalex-snapshot
Mass-spectrometry-based draft of the human proteome
inferredcites →https://doi.org/10.1038/nbt.1511openalex-snapshot
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
inferredcites →https://doi.org/10.1038/nbt.1524openalex-snapshot
Prediction of high-responding peptides for targeted protein assays by mass spectrometry
inferredcites →https://doi.org/10.1038/nbt.3418openalex-snapshot
The quantitative and condition-dependent Escherichia coli proteome
inferredcites →https://doi.org/10.1038/nbt1235openalex-snapshot
Protein biomarker discovery and validation: the long and uncertain path to clinical utility
inferredcites →https://doi.org/10.1038/nbt1275openalex-snapshot
Computational prediction of proteotypic peptides for quantitative proteomics
inferredcites →https://doi.org/10.1038/ncomms10261openalex-snapshot
Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics
inferredcites →https://doi.org/10.1074/mcp.m110.003384openalex-snapshot
CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches
inferredcites →https://doi.org/10.1074/mcp.m114.044321openalex-snapshot
Abundance-based Classifier for the Prediction of Mass Spectrometric Peptide Detectability Upon Enrichment (PPA)
inferredcites →https://doi.org/10.1074/mcp.t400003-mcp200openalex-snapshot
Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues
inferredcites →https://doi.org/10.1089/omi.2011.0156openalex-snapshot
Prediction of Missed Proteolytic Cleavages for the Selection of Surrogate Peptides for Quantitative Proteomics
inferredcites →https://doi.org/10.1093/bioinformatics/btl237openalex-snapshot
A computational approach toward label-free protein quantification using predicted peptide detectability
inferredcites →https://doi.org/10.1093/bioinformatics/btn218openalex-snapshot
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics
inferredcites →https://doi.org/10.1093/nar/27.1.368openalex-snapshot
AAindex: Amino Acid Index Database
inferredcites →https://doi.org/10.1093/nar/gkr1029openalex-snapshot
Saccharomyces Genome Database: the genomics resource of budding yeast
inferredcites →https://doi.org/10.1109/csb.2003.1227396openalex-snapshot
Minimum redundancy feature selection from microarray gene expression data
inferredcites →https://doi.org/10.1145/1276958.1277382openalex-snapshot
Peptide detectability following ESI mass spectrometry
inferredcites →https://doi.org/10.1186/1471-2105-8-s7-s23openalex-snapshot
Prediction of peptides observable by mass spectrometry applied at the experimental set level
inferredcites →https://doi.org/10.1186/1471-2105-9-529openalex-snapshot
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
inferredcites →https://doi.org/10.3389/fgene.2014.00305openalex-snapshot
PeptideManager: a peptide selection tool for targeted proteomic studies involving mixed samples from different species
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