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Direct observation of rotation-coupled protein diffusion along DNA on the microsecond timescale

https://doi.org/10.1101/401414
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/smll.200800423openalex-snapshot
Local Conformation of Confined DNA Studied Using Emission Polarization Anisotropy
inferredcites →https://doi.org/10.1016/s0021-9258(19)84994-3openalex-snapshot
Facilitated Target Location in Biological Systems
inferredcites →https://doi.org/10.1016/s0031-3203(01)00127-3openalex-snapshot
Extraction of spots in biological images using multiscale products
inferredcites →https://doi.org/10.1021/bc970174eopenalex-snapshot
A Homobifunctional Rhodamine for Labeling Proteins with Defined Orientations of a Fluorophore
inferredcites →https://doi.org/10.1021/bi00527a028openalex-snapshot
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
inferredcites →https://doi.org/10.1021/jp501778zopenalex-snapshot
Extending Single-Molecule Microscopy Using Optical Fourier Processing
inferredcites →https://doi.org/10.1038/73317openalex-snapshot
A closer view of the conformation of the Lac repressor bound to operator.
inferredcites →https://doi.org/10.1038/88611openalex-snapshot
ADP-induced rocking of the kinesin motor domain revealed by single-molecule fluorescence polarization microscopy.
inferredcites →https://doi.org/10.1038/nature01529openalex-snapshot
Three-dimensional structural dynamics of myosin V by single-molecule fluorescence polarization
inferredcites →https://doi.org/10.1038/nature14043openalex-snapshot
The heat released during catalytic turnover enhances the diffusion of an enzyme
inferredcites →https://doi.org/10.1038/nchembio.2152openalex-snapshot
TALE proteins search DNA using a rotationally decoupled mechanism
inferredcites →https://doi.org/10.1038/nmeth.1237openalex-snapshot
Robust single-particle tracking in live-cell time-lapse sequences
inferredcites →https://doi.org/10.1038/nsmb.1716openalex-snapshot
Nonspecifically bound proteins spin while diffusing along DNA
inferredcites →https://doi.org/10.1073/pnas.0505378102openalex-snapshot
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
inferredcites →https://doi.org/10.1073/pnas.0509723103openalex-snapshot
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
inferredcites →https://doi.org/10.1088/1751-8113/49/36/364002openalex-snapshot
The helical structure of DNA facilitates binding
inferredcites →https://doi.org/10.1093/nar/gkw035openalex-snapshot
Molecular sled sequences are common in mammalian proteins
inferredcites →https://doi.org/10.1103/physreve.89.022726openalex-snapshot
Optimal estimation of diffusion coefficients from single-particle trajectories
inferredcites →https://doi.org/10.1103/physrevlett.77.3979openalex-snapshot
Single Molecule Dynamics Studied by Polarization Modulation
inferredcites →https://doi.org/10.1109/18.761341openalex-snapshot
Analysis of multiscale products for step detection and estimation
inferredcites →https://doi.org/10.1126/science.1084387openalex-snapshot
Single-Molecule Kinetics of λ Exonuclease Reveal Base Dependence and Dynamic Disorder
inferredcites →https://doi.org/10.1126/science.1097064openalex-snapshot
Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes
inferredcites →https://doi.org/10.1126/science.1221648openalex-snapshot
The lac Repressor Displays Facilitated Diffusion in Living Cells
inferredcites →https://doi.org/10.1145/1188455.1188544openalex-snapshot
Molecular dynamics---Scalable algorithms for molecular dynamics simulations on commodity clusters
inferredcites →https://doi.org/10.1364/oe.11.003583openalex-snapshot
Fast calculation of fluorescence correlation data with asynchronous time-correlated single-photon counting
inferredcites →https://doi.org/10.1364/optica.3.000659openalex-snapshot
Enhanced DNA imaging using super-resolution microscopy and simultaneous single-molecule orientation measurements
inferredcites →https://doi.org/10.1371/journal.pone.0198416openalex-snapshot
Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI
inferredcites →https://doi.org/10.3791/55923openalex-snapshot
A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1021/acs.biochem.8b00917openalex-snapshot
Single-Molecule Tracking Approaches to Protein Synthesis Kinetics in Living Cells
inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c00771openalex-snapshot
The N-terminal Helix-Turn-Helix Motif of Transcription Factors MarA and Rob Drives DNA Recognition
inferred← citeshttps://doi.org/10.1146/annurev-biochem-013118-110801openalex-snapshot
Single-Molecule Kinetics in Living Cells
inferred← citeshttps://doi.org/10.70675/06b89c9fzc0e4z4a27z8869zbf0974666d0eopenalex-snapshot
Regulation of formin activity on actin bundles
inferred← citeshttps://doi.org/10.70675/bf8f07fdzcbc2z44f3z96bcz2a51c16db330openalex-snapshot
Tools to analyze single-particle tracking data in mammalian cells
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