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Assessment of population differentiation and linkage disequilibrium in Solanum pimpinellifolium using genome-wide high-density SNP markers

https://doi.org/10.1101/402420
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Outgoing claims: the papers this work cites, builds on, or argues with.

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DNA protection with the DNA methylase M · BbvI from Bacillus brevis var. GB against cleavage by the restriction endonucleases PstI and PvuII
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Using SSR markers to map genetic diversity and population structure ofSolanum pimpinellifoliumfor development of a core collection
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Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
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Exploiting the great potential of Sequence Capture data by a new tool, SUPER-CAP
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High Genetic Diversity and Low Population Structure in Porter's Sunflower (Helianthus porteri)
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The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
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Fast model-based estimation of ancestry in unrelated individuals
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St AMPP : an R package for calculation of genetic differentiation and structure of mixed‐ploidy level populations
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Population structure and phylogeography ofSolanum pimpinellifoliuminferred from a nuclear gene
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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ECOLOGICAL AND EVOLUTIONARY GENOMICS IN THE WILD TOMATOES (SOLANUM SECT. LYCOPERSICON)
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Stacks: an analysis tool set for population genomics
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Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era
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Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild
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Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'
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A network-based approach to identify substrate classes of bacterial glycosyltransferases
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The advantages and limitations of trait analysis with GWAS: a review
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Genome-wide association studies in plants: the missing heritability is in the field
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Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
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Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans
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Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato
inferredcites →https://doi.org/10.1371/journal.pone.0045520openalex-snapshot
High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding
inferredcites →https://doi.org/10.1371/journal.pone.0048198openalex-snapshot
Variation Revealed by SNP Genotyping and Morphology Provides Insight into the Origin of the Tomato
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Reassessment of QTLs for Late Blight Resistance in the Tomato Accession L3708 Using a Restriction Site Associated DNA (RAD) Linkage Map and Highly Aggressive Isolates of Phytophthora infestans
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Punctuated Distribution of Recombination Hotspots and Demarcation of Pericentromeric Regions in Phaseolus vulgaris L.
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Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps
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Genome-Wide Association Mapping in Tomato (Solanum lycopersicum) Is Possible Using Genome Admixture ofSolanum lycopersicumvar.cerasiforme
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Comparison of AFLPs with other markers for phylogenetic inference in wild tomatoes [ Solanum L. section Lycopersicon (Mill.) Wettst.]
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Regulatory Shifts in Plastid Transcription Play a Key Role in Morphological Conversions of Plastids during Plant Development
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