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Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae : The impact of a pathogen on the plant root and rhizosphere microbiota

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1522-2624(200008)163:4<381::aid-jpln381>3.0.co;2-7openalex-snapshot

Qualitative and quantitative analysis of water-soluble root exudates in relation to plant species and development

inferredcites →https://doi.org/10.1007/s001220051557openalex-snapshot

Mapping of one major gene and of QTLs involved in resistance to clubroot in Brassica napus

inferredcites →https://doi.org/10.1007/s00248-012-0132-9openalex-snapshot

Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing Technology

inferredcites →https://doi.org/10.1007/s002480000087openalex-snapshot

The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.

inferredcites →https://doi.org/10.1007/s00344-009-9101-zopenalex-snapshot

Life Cycle of Plasmodiophora brassicae

inferredcites →https://doi.org/10.1007/s11104-007-9514-zopenalex-snapshot

Lorenz Hiltner, a pioneer in rhizosphere microbial ecology and soil bacteriology research

inferredcites →https://doi.org/10.1007/s11104-008-9568-6openalex-snapshot

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

inferredcites →https://doi.org/10.1007/s11104-008-9814-yopenalex-snapshot

Plant-driven selection of microbes

inferredcites →https://doi.org/10.1016/j.chom.2015.01.011openalex-snapshot

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

inferredcites →https://doi.org/10.1016/j.mycres.2009.09.008openalex-snapshot

A comparison of Olpidium isolates from a range of host plants using internal transcribed spacer sequence analysis and host range studies

inferredcites →https://doi.org/10.1016/j.rhisph.2017.11.004openalex-snapshot

Bacterial community structure associated with the addition of nitrogen and the dynamics of soluble carbon in the rhizosphere of canola (Brassica napus) grown in a Podzol

inferredcites →https://doi.org/10.1016/j.soilbio.2017.11.012openalex-snapshot

Ralstonia solanacearum pathogen disrupts bacterial rhizosphere microbiome during an invasion

inferredcites →https://doi.org/10.1016/j.tplants.2012.04.001openalex-snapshot

The rhizosphere microbiome and plant health

inferredcites →https://doi.org/10.1016/s0929-1393(99)00028-1openalex-snapshot

Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots

inferredcites →https://doi.org/10.1023/a:1003997421340openalex-snapshot

Evaluation of French Brassica oleracea landraces for resistance to Plasmodiophora brassicae

inferredcites →https://doi.org/10.1038/hdy.2014.91openalex-snapshot

Improving soil bacterial taxa–area relationships assessment using DNA meta-barcoding

inferredcites →https://doi.org/10.1038/ismej.2015.41openalex-snapshot

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

inferredcites →https://doi.org/10.1038/ismej.2015.82openalex-snapshot

Fungal invasion of the rhizosphere microbiome

inferredcites →https://doi.org/10.1038/ismej.2016.109openalex-snapshot

Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time

inferredcites →https://doi.org/10.1038/nature11237openalex-snapshot

Defining the core Arabidopsis thaliana root microbiome

inferredcites →https://doi.org/10.1038/nature11336openalex-snapshot

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

inferredcites →https://doi.org/10.1038/ncomms11362openalex-snapshot

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

inferredcites →https://doi.org/10.1038/ncomms2431openalex-snapshot

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

inferredcites →https://doi.org/10.1038/nprot.2013.099openalex-snapshot

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

inferredcites →https://doi.org/10.1038/nrmicro2504openalex-snapshot

Microbial seed banks: the ecological and evolutionary implications of dormancy

inferredcites →https://doi.org/10.1038/nrmicro2910openalex-snapshot

Microbial life in the phyllosphere

inferredcites →https://doi.org/10.1038/s41396-018-0093-1openalex-snapshot

Disease-induced assemblage of a plant-beneficial bacterial consortium

inferredcites →https://doi.org/10.1038/srep28774openalex-snapshot

Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome

inferredcites →https://doi.org/10.1046/j.1365-3059.1996.d01-155.xopenalex-snapshot

Variation for virulence on Brassica napus L. amongst Plasmodiophora brassicae collections from France and derived single‐spore isolates

inferredcites →https://doi.org/10.1046/j.1439-0434.2003.00744.xopenalex-snapshot

Pathotype Separation of Plasmodiophora brassicae by the Host Plant

inferredcites →https://doi.org/10.1073/pnas.1321597111openalex-snapshot

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

inferredcites →https://doi.org/10.1073/pnas.1414592112openalex-snapshot

Structure, variation, and assembly of the root-associated microbiomes of rice

inferredcites →https://doi.org/10.1073/pnas.1616148114openalex-snapshot

Simplified and representative bacterial community of maize roots

inferredcites →https://doi.org/10.1073/pnas.92.10.4197openalex-snapshot

Molecular mechanisms of defense by rhizobacteria against root disease.

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/jxb/erv466openalex-snapshot

The plant microbiome explored: implications for experimental botany

inferredcites →https://doi.org/10.1093/nar/gkn879openalex-snapshot

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1093/pcp/pcv127openalex-snapshot

Both the Jasmonic Acid and the Salicylic Acid Pathways Contribute to Resistance to the Biotrophic Clubroot AgentPlasmodiophora brassicaein Arabidopsis

inferredcites →https://doi.org/10.1094/mpmi-01-15-0016-ropenalex-snapshot

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

inferredcites →https://doi.org/10.1111/1574-6976.12028openalex-snapshot

The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms

inferredcites →https://doi.org/10.1111/j.1364-3703.2011.00729.xopenalex-snapshot

Plasmodiophora brassicae : a review of an emerging pathogen of the Canadian canola ( Brassica napus ) crop

inferredcites →https://doi.org/10.1111/j.1469-8137.2006.01650.xopenalex-snapshot

Dynamic of the genetic structure of bacterial and fungal communities at different developmental stages of Medicago truncatula Gaertn. cv. Jemalong line J5

inferredcites →https://doi.org/10.1111/j.1751-7915.2011.00307.xopenalex-snapshot

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure

inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1111/jam.12946openalex-snapshot

A review: what is the spermosphere and how can it be studied?

inferredcites →https://doi.org/10.1111/nph.13312openalex-snapshot

The importance of the microbiome of the plant holobiont

inferredcites →https://doi.org/10.1126/science.aaa8764openalex-snapshot

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

inferredcites →https://doi.org/10.1128/aem.01938-17openalex-snapshot

Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape

inferredcites →https://doi.org/10.1128/aem.03722-14openalex-snapshot

Emergence Shapes the Structure of the Seed Microbiota

inferredcites →https://doi.org/10.1128/aem.66.10.4356-4360.2000openalex-snapshot

PCR Primers That Amplify Fungal rRNA Genes from Environmental Samples

inferredcites →https://doi.org/10.1128/mmbr.00050-14openalex-snapshot

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120106openalex-snapshot

Structure and Functions of the Bacterial Microbiota of Plants

inferredcites →https://doi.org/10.1146/annurev-ecolsys-121415-032238openalex-snapshot

The Phyllosphere: Microbial Jungle at the Plant–Climate Interface

inferredcites →https://doi.org/10.1146/annurev.micro.62.081307.162918openalex-snapshot

Plant-Growth-Promoting Rhizobacteria

inferredcites →https://doi.org/10.1146/annurev.phyto.40.030402.110010openalex-snapshot

M ICROBIAL P OPULATIONS R ESPONSIBLE FOR S PECIFIC S OIL S UPPRESSIVENESS TO P LANT P ATHOGENS

inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot

A scaling normalization method for differential expression analysis of RNA-seq data

inferredcites →https://doi.org/10.1371/journal.pone.0044279openalex-snapshot

Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure

inferredcites →https://doi.org/10.1371/journal.pone.0056329openalex-snapshot

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

inferredcites →https://doi.org/10.1371/journal.pone.0059859openalex-snapshot

Impact of Shortened Crop Rotation of Oilseed Rape on Soil and Rhizosphere Microbial Diversity in Relation to Yield Decline

inferredcites →https://doi.org/10.18637/jss.v069.i01openalex-snapshot

Least-Squares Means: The R Package lsmeans

inferredcites →https://doi.org/10.1890/0012-9658(2003)084[0511:caopca]2.0.co;2openalex-snapshot

CANONICAL ANALYSIS OF PRINCIPAL COORDINATES: A USEFUL METHOD OF CONSTRAINED ORDINATION FOR ECOLOGY

inferredcites →https://doi.org/10.3389/fevo.2018.00091openalex-snapshot

Influence of Belowground Herbivory on the Dynamics of Root and Rhizosphere Microbial Communities

inferredcites →https://doi.org/10.3389/fmicb.2014.00175openalex-snapshot

The impact of the pathogen Rhizoctonia solani and its beneficial counterpart Bacillus amyloliquefaciens on the indigenous lettuce microbiome

inferredcites →https://doi.org/10.3389/fmicb.2016.01314openalex-snapshot

Aboveground Whitefly Infestation-Mediated Reshaping of the Root Microbiota

inferredcites →https://doi.org/10.3389/fmicb.2017.01489openalex-snapshot

Crop Establishment Practices Are a Driver of the Plant Microbiota in Winter Oilseed Rape (Brassica napus)

inferredcites →https://doi.org/10.3389/fpls.2013.00165openalex-snapshot

The rhizosphere revisited: root microbiomics

inferredcites →https://doi.org/10.3389/fpls.2017.00132openalex-snapshot

Community Structure, Species Variation, and Potential Functions of Rhizosphere-Associated Bacteria of Different Winter Wheat (Triticum aestivum) Cultivars

inferredcites →https://doi.org/10.4014/jmb.1511.11058openalex-snapshot

Root Exudation by Aphid Leaf Infestation Recruits Root-Associated Paenibacillus spp. to Lead Plant Insect Susceptibility

inferredcites →https://doi.org/10.7717/peerj.3454openalex-snapshot

Ecophylogeny of the endospheric root fungal microbiome of co-occurring Agrostis stolonifera

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3390/microorganisms10040799openalex-snapshot

Three Preceding Crops Increased the Yield of and Inhibited Clubroot Disease in Continuously Monocropped Chinese Cabbage by Regulating the Soil Properties and Rhizosphere Microbial Community

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