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Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks

https://doi.org/10.1101/411520
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Pajek— Analysis and Visualization of Large Networks
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Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking
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Network motifs in the transcriptional regulation network of Escherichia coli
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Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
inferredcites →https://doi.org/10.1093/bioinformatics/bti556openalex-snapshot
MAVisto: a tool for the exploration of network motifs
inferredcites →https://doi.org/10.1093/bioinformatics/btl038openalex-snapshot
FANMOD: a tool for fast network motif detection
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Topological structure analysis of the protein-protein interaction network in budding yeast
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The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
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Random graphs with arbitrary degree distributions and their applications
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Coarse-graining and self-dissimilarity of complex networks
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An Efficient Network Motif Discovery Approach for Co-Regulatory Networks
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Overlapping Communities Explain Core–Periphery Organization of Networks
inferredcites →https://doi.org/10.1109/tkde.2016.2566618openalex-snapshot
Network Motif Discovery: A GPU Approach
inferredcites →https://doi.org/10.1126/science.1073374openalex-snapshot
Hierarchical Organization of Modularity in Metabolic Networks
inferredcites →https://doi.org/10.1126/science.298.5594.824openalex-snapshot
Network Motifs: Simple Building Blocks of Complex Networks
inferredcites →https://doi.org/10.1126/science.aad9029openalex-snapshot
Higher-order organization of complex networks
inferredcites →https://doi.org/10.1145/1150402.1150418openalex-snapshot
NeMoFinder
inferredcites →https://doi.org/10.1145/1774088.1774422openalex-snapshot
g-tries
inferredcites →https://doi.org/10.1145/2898361openalex-snapshot
SNAP
inferredcites →https://doi.org/10.1145/3097983.3098069openalex-snapshot
Local Higher-Order Graph Clustering
inferredcites →https://doi.org/10.1145/321921.321925openalex-snapshot
An Algorithm for Subgraph Isomorphism
inferredcites →https://doi.org/10.1155/2009/616234openalex-snapshot
Assessing the Exceptionality of Coloured Motifs in Networks
inferredcites →https://doi.org/10.1186/1471-2105-10-318openalex-snapshot
Kavosh: a new algorithm for finding network motifs
inferredcites →https://doi.org/10.1371/journal.pone.0043287openalex-snapshot
CytoKavosh: A Cytoscape Plug-In for Finding Network Motifs in Large Biological Networks
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QuateXelero: An Accelerated Exact Network Motif Detection Algorithm
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