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Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/oby.22927openalex-snapshot

Genome‐Wide Association Study in 3,173 Outbred Rats Identifies Multiple Loci for Body Weight, Adiposity, and Fasting Glucose

inferredcites →https://doi.org/10.1006/mcne.1998.0696openalex-snapshot

Regulation of Hippocampal Synaptic Plasticity by the Tyrosine Kinase Receptor, REK7/EphA5, and its Ligand, AL-1/Ephrin-A5

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Heterogeneous Stock Populations for Analysis of Complex Traits

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Genetic propensities to increase ethanol intake in response to stress: studies with selectively bred swim test susceptible (SUS), alcohol-preferring (P), and non-preferring (NP) lines of rats

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A classically conditioned cocaine cue acquires greater control over motivated behavior in rats prone to attribute incentive salience to a food cue

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Less is more: prolonged intermittent access cocaine self-administration produces incentive-sensitization and addiction-like behavior

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Selective Breeding for Divergence in Novelty-seeking Traits: Heritability and Enrichment in Spontaneous Anxiety-related Behaviors

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Susceptibility and resistance of rats to stress-induced decreases in swim-test activity: a selective breeding study

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In vitro guidance of retinal ganglion cell axons by RAGS, a 25 kDa tectal protein related to ligands for Eph receptor tyrosine kinases

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The noradrenergic innervation of the spinal cord: differences between two substrains of Sprague-Dawley rats determined using retrograde tracers combined with immunocytochemistry

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The History of the Rat

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A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

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GCTA: A Tool for Genome-wide Complex Trait Analysis

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Genotype Imputation with Millions of Reference Samples

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Sign-tracking to an appetitive cue predicts incubation of conditioned fear in rats

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Individual variation in the propensity to attribute incentive salience to a food cue: Influence of sex

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Ephrin-A5 regulates inter-male aggression in mice

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Rats that sign-track are resistant to Pavlovian but not instrumental extinction

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The ability for cocaine and cocaine-associated cues to compete for attention

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Dissociating the Predictive and Incentive Motivational Properties of Reward-Related Cues Through the Study of Individual Differences

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Marked strain and substrain differences in induction of status epilepticus and subsequent development of neurodegeneration, epilepsy, and behavioral alterations in rats

inferredcites →https://doi.org/10.1016/j.neuron.2016.08.013openalex-snapshot

Genetic Background Limits Generalizability of Genotype-Phenotype Relationships

inferredcites →https://doi.org/10.1016/j.neuropharm.2008.06.027openalex-snapshot

Individual differences in the attribution of incentive salience to reward-related cues: Implications for addiction

inferredcites →https://doi.org/10.1016/j.neuropharm.2013.05.040openalex-snapshot

On the motivational properties of reward cues: Individual differences

inferredcites →https://doi.org/10.1016/j.neuropharm.2013.05.047openalex-snapshot

Rats are the smart choice: Rationale for a renewed focus on rats in behavioral genetics

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Facilitating Complex Trait Analysis via Reduced Complexity Crosses

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Anesthesia induced retrograde amnesia is ameliorated by ephrinA5-IgG in mice: EphA receptor tyrosine kinases are involved in mammalian memory

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Liking, wanting, and the incentive-sensitization theory of addiction.

inferredcites →https://doi.org/10.1038/nature09588openalex-snapshot

A selective role for dopamine in stimulus–reward learning

inferredcites →https://doi.org/10.1038/ng.2310openalex-snapshot

Genome-wide efficient mixed-model analysis for association studies

inferredcites →https://doi.org/10.1038/ng.2644openalex-snapshot

Combined sequence-based and genetic mapping analysis of complex traits in outbred rats

inferredcites →https://doi.org/10.1038/ng.2876openalex-snapshot

Advantages and pitfalls in the application of mixed-model association methods

inferredcites →https://doi.org/10.1038/ng.3190openalex-snapshot

Efficient Bayesian mixed-model analysis increases association power in large cohorts

inferredcites →https://doi.org/10.1038/ng.3211openalex-snapshot

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

inferredcites →https://doi.org/10.1038/ng.3594openalex-snapshot

Rapid genotype imputation from sequence without reference panels

inferredcites →https://doi.org/10.1038/ng.3595openalex-snapshot

Genome-wide association of multiple complex traits in outbred mice by ultra-low-coverage sequencing

inferredcites →https://doi.org/10.1038/ng.3609openalex-snapshot

Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice

inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot

A framework for variation discovery and genotyping using next-generation DNA sequencing data

inferredcites →https://doi.org/10.1038/ng1847openalex-snapshot

Principal components analysis corrects for stratification in genome-wide association studies

inferredcites →https://doi.org/10.1038/nmeth.2037openalex-snapshot

Improved linear mixed models for genome-wide association studies

inferredcites →https://doi.org/10.1038/npp.2009.142openalex-snapshot

An Animal Model of Genetic Vulnerability to Behavioral Disinhibition and Responsiveness to Reward-Related Cues: Implications for Addiction

inferredcites →https://doi.org/10.1038/npp.2014.314openalex-snapshot

Individual Variation in the Motivational and Neurobiological Effects of an Opioid Cue

inferredcites →https://doi.org/10.1038/nrg2611openalex-snapshot

Genetics in geographically structured populations: defining, estimating and interpreting FST

inferredcites →https://doi.org/10.1038/s41467-018-07642-8openalex-snapshot

Genome wide association analysis in a mouse advanced intercross line

inferredcites →https://doi.org/10.1038/s41598-017-18526-0openalex-snapshot

Characterization of Dopaminergic System in the Striatum of Young Adult Park2−/− Knockout Rats

inferredcites →https://doi.org/10.1086/429864openalex-snapshot

A Note on Exact Tests of Hardy-Weinberg Equilibrium

inferredcites →https://doi.org/10.1086/519795openalex-snapshot

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

inferredcites →https://doi.org/10.1093/genetics/138.3.963openalex-snapshot

Empirical threshold values for quantitative trait mapping.

inferredcites →https://doi.org/10.1093/hmg/ddx280openalex-snapshot

Trans-ethnic meta-regression of genome-wide association studies accounting for ancestry increases power for discovery and improves fine-mapping resolution

inferredcites →https://doi.org/10.1093/nar/gkn842openalex-snapshot

The Rat Genome Database 2009: variation, ontologies and pathways

inferredcites →https://doi.org/10.1101/2021.02.05.429998openalex-snapshot

Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility

inferredcites →https://doi.org/10.1101/275917openalex-snapshot

Genome-wide association study meta-analysis of the Alcohol Use Disorder Identification Test (AUDIT) in two population-based cohorts (N=141,932)

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.154831.113openalex-snapshot

Estimating and interpreting F ST : The impact of rare variants

inferredcites →https://doi.org/10.1101/lm.043026.116openalex-snapshot

The sensory features of a food cue influence its ability to act as an incentive stimulus and evoke dopamine release in the nucleus accumbens core

inferredcites →https://doi.org/10.1111/ejn.13134openalex-snapshot

Individual variation in incentive salience attribution and accumbens dopamine transporter expression and function

inferredcites →https://doi.org/10.1111/gbb.12319openalex-snapshot

Decreased maternal behavior and anxiety in ephrin‐A5−/− mice

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05285.xopenalex-snapshot

Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination

inferredcites →https://doi.org/10.1111/j.1460-9568.2012.08217.xopenalex-snapshot

The role of dopamine in the accumbens core in the expression of Pavlovian‐conditioned responses

inferredcites →https://doi.org/10.1111/mec.12845openalex-snapshot

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass

inferredcites →https://doi.org/10.1126/science.273.5281.1516openalex-snapshot

The Future of Genetic Studies of Complex Human Diseases

inferredcites →https://doi.org/10.1152/physiolgenomics.2001.4.3.175openalex-snapshot

Expression of hypoglossal long-term facilitation differs between substrains of Sprague-Dawley rat

inferredcites →https://doi.org/10.1159/000054475openalex-snapshot

Sprague-Dawley Rats Obtained from Different Vendors Exhibit Distinct Adrenocorticotropin Responses to Inflammatory Stimuli

inferredcites →https://doi.org/10.1177/1091581810391818openalex-snapshot

Differences in Rat Models Used in Routine Toxicity Studies

inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot

ANGSD: Analysis of Next Generation Sequencing Data

inferredcites →https://doi.org/10.1186/s12864-015-1594-1openalex-snapshot

Genomic landscape of rat strain and substrain variation

inferredcites →https://doi.org/10.1186/s13059-016-0903-6openalex-snapshot

Multiple testing correction in linear mixed models

inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot

Second-generation PLINK: rising to the challenge of larger and richer datasets

inferredcites →https://doi.org/10.1210/en.2015-1497openalex-snapshot

Colony-Specific Differences in Endocrine and Immune Responses to an Inflammatory Challenge in Female Sprague Dawley Rats

inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot

Population Structure and Eigenanalysis

inferredcites →https://doi.org/10.1371/journal.pgen.1000456openalex-snapshot

Rapid and Accurate Multiple Testing Correction and Power Estimation for Millions of Correlated Markers

inferredcites →https://doi.org/10.1371/journal.pgen.1002555openalex-snapshot

Interpreting Meta-Analyses of Genome-Wide Association Studies

inferredcites →https://doi.org/10.1371/journal.pgen.1002975openalex-snapshot

The Long Path from QTL to Gene

inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

inferredcites →https://doi.org/10.1371/journal.pone.0038987openalex-snapshot

Quantifying Individual Variation in the Propensity to Attribute Incentive Salience to Reward Cues

inferredcites →https://doi.org/10.1371/journal.pone.0075042openalex-snapshot

Variation in the Form of Pavlovian Conditioned Approach Behavior among Outbred Male Sprague-Dawley Rats from Different Vendors and Colonies: Sign-Tracking vs. Goal-Tracking

inferredcites →https://doi.org/10.1371/journal.pone.0098163openalex-snapshot

The Form of a Conditioned Stimulus Can Influence the Degree to Which It Acquires Incentive Motivational Properties

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.1523/jneurosci.0450-13.2013openalex-snapshot

Cue-Evoked Cocaine "Craving": Role of Dopamine in the Accumbens Core

inferredcites →https://doi.org/10.1523/jneurosci.0709-13.2013openalex-snapshot

Cholinergic Control over Attention in Rats Prone to Attribute Incentive Salience to Reward Cues

inferredcites →https://doi.org/10.1523/jneurosci.0736-16.2016openalex-snapshot

Neural Activity in the Ventral Pallidum Encodes Variation in the Incentive Value of a Reward Cue

inferredcites →https://doi.org/10.1523/jneurosci.19-21-09538.1999openalex-snapshot

Regulation of Learning by EphA Receptors: a Protein Targeting Study

inferredcites →https://doi.org/10.1534/g3.118.200187openalex-snapshot

A High-Resolution Genetic Map for the Laboratory Rat

inferredcites →https://doi.org/10.1534/g3.120.401325openalex-snapshot

Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats

inferredcites →https://doi.org/10.1534/genetics.107.080101openalex-snapshot

Efficient Control of Population Structure in Model Organism Association Mapping

inferredcites →https://doi.org/10.1534/genetics.110.116863openalex-snapshot

Genome-Wide Association Studies and the Problem of Relatedness Among Advanced Intercross Lines and Other Highly Recombinant Populations

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A Simulation Study of Permutation, Bootstrap, and Gene Dropping for Assessing Statistical Significance in the Case of Unequal Relatedness

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Response: Commentary: Supplier-dependent differences in intermittent voluntary alcohol intake and response to naltrexone in Wistar rats

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Pavlovian Conditioned Approach Training in Rats

inferredcites →https://doi.org/10.5625/lar.2015.31.4.166openalex-snapshot

Comparative analysis of growth characteristics of Sprague Dawley rats obtained from different sources

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Parkinson’s Disease and Parkin: Insights from Park2 Knockout Mice

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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