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Lessons learned when looking for non-neutral ecological processes in the built environment: the bacterial and fungal microbiota of shower tiles

https://doi.org/10.1101/413773
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.funbio.2011.04.007openalex-snapshot
Dishwashers – A man-made ecological niche accommodating human opportunistic fungal pathogens
inferredcites →https://doi.org/10.1016/j.simyco.2015.12.001openalex-snapshot
Towards an integrated phylogenetic classification of the Tremellomycetes
inferredcites →https://doi.org/10.1038/ismej.2015.142openalex-snapshot
Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development
inferredcites →https://doi.org/10.1038/nature12171openalex-snapshot
Topographic diversity of fungal and bacterial communities in human skin
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/nrmicro.2017.157openalex-snapshot
The human skin microbiome
inferredcites →https://doi.org/10.1073/pnas.0501235102openalex-snapshot
Molecular identification of potential pathogens in water and air of a hospital therapy pool
inferredcites →https://doi.org/10.1073/pnas.0908446106openalex-snapshot
Opportunistic pathogens enriched in showerhead biofilms
inferredcites →https://doi.org/10.1073/pnas.1000162107openalex-snapshot
Forensic identification using skin bacterial communities
inferredcites →https://doi.org/10.1073/pnas.1420406112openalex-snapshot
Tracking heavy water (D 2 O) incorporation for identifying and sorting active microbial cells
inferredcites →https://doi.org/10.1073/pnas.1420815112openalex-snapshot
Continental-scale distributions of dust-associated bacteria and fungi
inferredcites →https://doi.org/10.1080/00275514.1976.12019994openalex-snapshot
Gibberella Baccata, The Perfect State of Fusarium Lateritium in Nigeria
inferredcites →https://doi.org/10.1086/284880openalex-snapshot
Sources, Sinks, and Population Regulation
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1098/rspb.2015.1139openalex-snapshot
The ecology of microscopic life in household dust
inferredcites →https://doi.org/10.1101/074161openalex-snapshot
SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences
inferredcites →https://doi.org/10.1111/j.1364-3703.2009.00538.xopenalex-snapshot
Pathogen profile update: Fusarium oxysporum
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00956.xopenalex-snapshot
Quantifying the roles of immigration and chance in shaping prokaryote community structure
inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01376.xopenalex-snapshot
UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi
inferredcites →https://doi.org/10.1126/science.1254529openalex-snapshot
Longitudinal analysis of microbial interaction between humans and the indoor environment
inferredcites →https://doi.org/10.1128/aem.00658-09openalex-snapshot
Potentially Pathogenic Bacteria in Shower Water and Air of a Stem Cell Transplant Unit
inferredcites →https://doi.org/10.1128/aem.03117-14openalex-snapshot
Ecological Succession and Viability of Human-Associated Microbiota on Restroom Surfaces
inferredcites →https://doi.org/10.1128/msystems.00218-17openalex-snapshot
KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples
inferredcites →https://doi.org/10.1139/cjm-2015-0562openalex-snapshot
Microbiota formed on attached stainless steel coupons correlates with the natural biofilm of the sink surface in domestic kitchens
inferredcites →https://doi.org/10.1186/s40168-015-0128-zopenalex-snapshot
Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences
inferredcites →https://doi.org/10.1186/s40168-017-0347-6openalex-snapshot
Microbes and associated soluble and volatile chemicals on periodically wet household surfaces
inferredcites →https://doi.org/10.1186/s40168-018-0605-2openalex-snapshot
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
inferredcites →https://doi.org/10.1371/journal.pone.0028132openalex-snapshot
Microbial Biogeography of Public Restroom Surfaces
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0064133openalex-snapshot
Home Life: Factors Structuring the Bacterial Diversity Found within and between Homes
inferredcites →https://doi.org/10.1371/journal.pone.0078866openalex-snapshot
The Diversity and Distribution of Fungi on Residential Surfaces
inferredcites →https://doi.org/10.1371/journal.pone.0122605openalex-snapshot
Fungi Identify the Geographic Origin of Dust Samples
inferredcites →https://doi.org/10.1371/journal.pone.0148166openalex-snapshot
The Black Yeast Exophiala dermatitidis and Other Selected Opportunistic Human Fungal Pathogens Spread from Dishwashers to Kitchens
inferredcites →https://doi.org/10.3390/pathogens4020373openalex-snapshot
Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics
inferredcites →https://doi.org/10.7717/peerj.4925openalex-snapshot
Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11783-020-1357-3openalex-snapshot
Understanding building-occupant-microbiome interactions toward healthy built environments: A review
inferred← citeshttps://doi.org/10.1021/acs.est.3c01616openalex-snapshot
Indoor Airborne Microbiome and Endotoxin: Meteorological Events and Occupant Characteristics Are Important Determinants
inferred← citeshttps://doi.org/10.1038/s41370-019-0157-yopenalex-snapshot
Building upon current knowledge and techniques of indoor microbiology to construct the next era of theory into microorganisms, health, and the built environment
inferred← citeshttps://doi.org/10.1088/1755-1315/1113/1/012003openalex-snapshot
Environmental Architectural Design during the Pandemic Era: Office Buildings as a Case Study
inferred← citeshttps://doi.org/10.1111/ina.12596openalex-snapshot
From one species to another: A review on the interaction between chemistry and microbiology in relation to cleaning in the built environment
inferred← citeshttps://doi.org/10.21608/dusj.2023.291078openalex-snapshot
Biomimicry as a Turning Point in Reducing COVID-19 Infection
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