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Dioecy in plants: an evolutionary dead end? Insights from a population genomics study in the Silene genus

https://doi.org/10.1101/414771
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4899-4541-9_1openalex-snapshot
Introduction
inferredcites →https://doi.org/10.1007/978-3-319-33038-9_168-1openalex-snapshot
The Evolution of Sex Determination in Plants
inferredcites →https://doi.org/10.1007/s10530-010-9907-4openalex-snapshot
A phylogenetic comparative study of preadaptation for invasiveness in the genus Silene (Caryophyllaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2018.02.015openalex-snapshot
Evolution of sexual systems and growth habit in Mussaenda (Rubiaceae): Insights into the evolutionary pathways of dioecy
inferredcites →https://doi.org/10.1038/hdy.2009.34openalex-snapshot
Silene as a model system in ecology and evolution
inferredcites →https://doi.org/10.1038/hdy.2015.100openalex-snapshot
Phylogeographic pattern of range expansion provides evidence for cryptic species lineages in Silene nutans in Western Europe
inferredcites →https://doi.org/10.1038/nature13685openalex-snapshot
Comparative population genomics in animals uncovers the determinants of genetic diversity
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nplants.2016.168openalex-snapshot
Evolution of sex-biased gene expression in a dioecious plant
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/nrg776openalex-snapshot
The evolution of plant sexual diversity
inferredcites →https://doi.org/10.1046/j.1420-9101.2003.00559.xopenalex-snapshot
Phylogenetic analysis of the ecological correlates of dioecy in angiosperms
inferredcites →https://doi.org/10.1073/pnas.1201695109openalex-snapshot
Allee effect promotes diversity in traveling waves of colonization
inferredcites →https://doi.org/10.1073/pnas.1508454112openalex-snapshot
Rapid Y degeneration and dosage compensation in plant sex chromosomes
inferredcites →https://doi.org/10.1073/pnas.88.10.4494openalex-snapshot
Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants.
inferredcites →https://doi.org/10.1080/10635150701607033openalex-snapshot
Estimating a Binary Character's Effect on Speciation and Extinction
inferredcites →https://doi.org/10.1086/303389openalex-snapshot
Lower Species Richness in Dioecious Clades
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot
Quality control and preprocessing of metagenomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btr669openalex-snapshot
Identification and removal of ribosomal RNA sequences from metatranscriptomes
inferredcites →https://doi.org/10.1093/gbe/evs054openalex-snapshot
The Population Genomics of a Fast Evolver: High Levels of Diversity, Functional Constraint, and Molecular Adaptation in the Tunicate Ciona intestinalis
inferredcites →https://doi.org/10.1093/gbe/evw172openalex-snapshot
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
inferredcites →https://doi.org/10.1093/molbev/mst192openalex-snapshot
Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS
inferredcites →https://doi.org/10.1093/sysbio/syu024openalex-snapshot
Standard Sister Clade Comparison Fails when Testing Derived Character States
inferredcites →https://doi.org/10.1098/rspb.1996.0062openalex-snapshot
Evolution of reproductive systems in the genus Silene
inferredcites →https://doi.org/10.1098/rspb.2002.2004openalex-snapshot
When looks can kill: the evolution of sexually dimorphic floral display and the extinction of dioecious plants
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1111/1755-0998.12264openalex-snapshot
Using genotyping data to assign markers to their chromosome type and to infer the sex of individuals: a Bayesian model‐based classifier
inferredcites →https://doi.org/10.1111/evo.12223openalex-snapshot
EVOLUTION OF SEX DETERMINATION SYSTEMS WITH HETEROGAMETIC MALES AND FEMALES INSILENE
inferredcites →https://doi.org/10.1111/evo.13181openalex-snapshot
Macroevolutionary synthesis of flowering plant sexual systems
inferredcites →https://doi.org/10.1111/evo.13245openalex-snapshot
Lineages ofSilene nutansdeveloped rapid, strong, asymmetric postzygotic reproductive isolation in allopatry
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.02840.xopenalex-snapshot
Correlates of genetic differentiation and isolation by distance in 17 congenericSilenespecies
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/j.1755-0998.2012.03148.xopenalex-snapshot
Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data
inferredcites →https://doi.org/10.1111/jeb.12052openalex-snapshot
Patterns of molecular evolution in dioecious and non‐dioecious Silene
inferredcites →https://doi.org/10.1111/jeb.12385openalex-snapshot
Dioecy is associated with higher diversification rates in flowering plants
inferredcites →https://doi.org/10.1111/mec.12738openalex-snapshot
Transcriptome population genomics reveals severe bottleneck and domestication cost in the A frican rice ( O ryza glaberrima)
inferredcites →https://doi.org/10.1111/mec.14020openalex-snapshot
On the rarity of dioecy in flowering plants
inferredcites →https://doi.org/10.1111/nph.13696openalex-snapshot
Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms
inferredcites →https://doi.org/10.1371/journal.pgen.1003457openalex-snapshot
Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap
inferredcites →https://doi.org/10.1371/journal.pgen.1005774openalex-snapshot
Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis
inferredcites →https://doi.org/10.1371/journal.pone.0022594openalex-snapshot
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1371/journal.pone.0026314openalex-snapshot
ConDeTri - A Content Dependent Read Trimmer for Illumina Data
inferredcites →https://doi.org/10.1534/genetics.107.080663openalex-snapshot
Joint Inference of the Distribution of Fitness Effects of Deleterious Mutations and Population Demography Based on Nucleotide Polymorphism Frequencies
inferredcites →https://doi.org/10.1534/genetics.117.300323openalex-snapshot
Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data
inferredcites →https://doi.org/10.1554/0014-3820(2001)055[0880:tcodfs]2.0.co;2openalex-snapshot
THE CONSEQUENCES OF DIOECY FOR SEED DISPERSAL: MODELING THE SEED-SHADOW HANDICAP
inferredcites →https://doi.org/10.2307/4113750openalex-snapshot
Atlas Florae Europaeae. Distribution of Vascular Plants in Europe. 7 Caryophyllaceae. (Silenoideae)
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3732/ajb.1400196openalex-snapshot
The relative and absolute frequencies of angiosperm sexual systems: Dioecy, monoecy, gynodioecy, and an updated online database

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-15-4210-7_11openalex-snapshot
Outbreeding in Angiosperms: Floral Architecture and Sexuality
inferred← citeshttps://doi.org/10.1007/978-981-15-4210-7_9openalex-snapshot
Dynamics of Eco-Evolutionary Forces in Shaping Dioecy
inferred← citeshttps://doi.org/10.1007/s12041-025-01521-0openalex-snapshot
Mitotic karyotyping and FISH mapping of the gender-specific locus indicate an advanced XY system in Hippophae rhamnoides
inferred← citeshttps://doi.org/10.1007/s44372-026-00470-xopenalex-snapshot
A floristic overview and conservation status of dioecious plants of Uttar Pradesh, India
inferred← citeshttps://doi.org/10.1038/s41438-020-00401-1openalex-snapshot
Scale-dependent effects of habitat fragmentation on the genetic diversity of Actinidia chinensis populations in China
inferred← citeshttps://doi.org/10.1038/s41598-021-85480-3openalex-snapshot
Transcriptional regulation of dosage compensation in Carica papaya
inferred← citeshttps://doi.org/10.1093/botlinnean/boab026openalex-snapshot
A leaky dimorphic sexual system and breeding system characterize a successful island colonist: the reproductive biology of Plocama pendula (Rubiaceae)
inferred← citeshttps://doi.org/10.1093/molbev/msy246openalex-snapshot
Pleiotropy Modulates the Efficacy of Selection inDrosophila melanogaster
inferred← citeshttps://doi.org/10.3390/plants12020228openalex-snapshot
Sex Determination in Dioscorea dumetorum: Evidence of Heteromorphic Sex Chromosomes and Sex-Linked NORs
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